GgaINT1022738 @ galGal4
Intron Retention
Gene
ENSGALG00000004463 | PRSS56
Description
protease, serine, 56 [Source:HGNC Symbol;Acc:HGNC:39433]
Coordinates
chr9:15070595-15072216:+
Coord C1 exon
chr9:15070595-15070690
Coord A exon
chr9:15070691-15072167
Coord C2 exon
chr9:15072168-15072216
Length
1477 bp
Sequences
Splice sites
5' ss Seq
GGGGTGCCT
5' ss Score
-1.8
3' ss Seq
GGGGGCAGAGGTTAGCGTCGGCA
3' ss Score
-21.27
Exon sequences
Seq C1 exon
CGCTGTCAAGCCGGGGGACGCTGGTGCTGGAGGCGGCACTGAGGAGCGCGCTGATGGCACTGGAGCAGGCACTGGCTGAGCAGCAGAAGCAACGGG
Seq A exon
GTGCCTGTGGGCTCTGTGCCCCCTGCCTCTTCCCTCCCTGCTCCAACATCACCCAACGCTGCCCACGTGAGTCTCATCTCACCCCACCACAGCCCTACCCCATCCCCTATAGATCCTACCCAGGCAATATCCCCCATAGTCGCCAACCTATAGGCTTTACCAGAACACTGCCCTGTTTGCTAAAGACCCTACTGAAACACTGCCCAGTGACGCTACCCAAGCAGATCCCCATCCTCTTGAGATCCTGCCCAAACTGAAGCCCTACCCTAAACACTGCCAGACCCTTTCTTCTCACCCCAAATACTCCCCCCACCCCCCAAAAAAAAACACATTCTCTGAGCCCCTACCCCACCCAGGAGACCCTACCAAAACAAAACAGCCCCACCATGCCTCCTCCCCACCCACCCTGGGATGGCCCAGGCAGAGGTGGGCAGGGGGCAATGAGGATGCGAGGATGCCCACGACATCACTGTCCCTGCAGCCCCTGCCGTGCCCCCCGCCATGCCCCCCAGCTGCCAGGCCCTGCTGGATGCCCAGGAGCTGCCCGAGCTGCCCCAGCGCCACTGGGCTCTGAGCCAGGCGTGTTCTCCCTACCTGCGCCTGTGCCCCCTCCAGGGCACTCAGCCTGCCTGCACCCTGCTCAGTGCCCAGCGCTGCCAGCACCGCCTCCAGGAGTGCCGTGAGTGGGCATCTCCTGGAAAGGGGAGACCCTACAATAACAAATGAGGCGTCAGATTGCCTGGAGGGGATATGGGGCAGTGAGGGTGGGATGGGATGGGAGGGGGAGGCCAGGGGGTGATGGGGTGAGGGGGGAGAGGGGGGTTGGAGGATGGAGCATTGTGTGGTGGATCGAGGGGAAGAAGAACTGGGGATGAAGGAGGAATGTGGAGTGAGATTTGTGGGCTGGAGGCATTGGGATGGGGAAATGGGGGTGGAGGCATTGGGGAGTGATTGGGAACATAGGTGGGATTAGGGGGAGCAGAACTGGGGATGAAGGAGGGATCTGAGGTCTAGATGAGATTTGGGGGATGAAGATTTTGGGAGGGATGGGGAAATGGGGACGGGGCGTTGGAGGTGATGCAGGGGATCAGAAATAGGTGGCAGTGGGGATTCAGCAGGGGGACGGAGCACTGGAAGGATCACAGAGGTTTTGAAGTGGAACACGGAGATATGGGGTGGAATGGAGAAATTGAGGGCACAGACACACTGAGGGATGGAGAATCCAGAGTGGGACAGGACAGTGGGGGTACAGACTGGGGACACAGAGACACTGGGGACACCGAGGACATCGGGTGGCACTGAGGGCAGCGGGCACATGGCCCCCACCCACCACACCAACCCATCCCACAGTGCTGGCGAAGGCAGCCCCGAATCCCAGCATGGCAGCAGCGATGCCAGGTGAGCCGGGGACAGCAGCTCCCACAGCCCCCCACAGCCCCCAACCCCACGCTGTGCCGGGGGGCAGAGGTTAGCGTCG
Seq C2 exon
GCAGCTGCCGGCCCGCGGGGTGCCCCCGGCCCACCGCCCGCTCGCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004463:ENSGALT00000007102:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.412
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]