HsaINT1028256 @ hg38
Intron Retention
Gene
ENSG00000237412 | PRSS56
Description
protease, serine 56 [Source:HGNC Symbol;Acc:HGNC:39433]
Coordinates
chr2:232521321-232521866:+
Coord C1 exon
chr2:232521321-232521428
Coord A exon
chr2:232521429-232521815
Coord C2 exon
chr2:232521816-232521866
Length
387 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCCC
5' ss Score
4.12
3' ss Seq
AAAGGTCTGTTTCTCTGCAGGAT
3' ss Score
9.56
Exon sequences
Seq C1 exon
TTCTGTCGGCCCAGGGGACTCAGGCGTTGCAGGCAGCCCAGAGGAGCGCCCAGTGGGCAATAAACCGAGTGGCGATGGAGATCCAGCACAGATCGCACGAGTGCCGAG
Seq A exon
GTGCCCACCCTGCCCCCCGTGCCCCAGTGAGCTTGCTGCCTACCCTGGGCCCATTCTGCTGCCTCTGTCCCTTCCCTTCAGTCTTCACTCTCCTCTTGGGGGCAGAGACTGTGTTGGGCCGCAACCTAGACTACGTTTGTGAAGGTCTGTCTCTCCGAGTGGAAAGGACACGCTAGGCTTGGGGCATGGCCTGTGCAAAGGCAGGGAGGCGGAAACACTCTGGGCTCCTGTGGTGACCAGGAGAAGTTCATGGTTGCTGAAATAGAACCCGTGTGGGCTGGAGGGCTGAGCGCGAAAGGAGAGATGGGGAGAGAGAGGCTCGGCCCAGCCTGGGGTGAGGACAGGCGAGAGGGCAGCAGTGAGACTCAAAGGTCTGTTTCTCTGCAG
Seq C2 exon
GATCTGGGCGCCCCAGGCCTCAAGCTCTCCTCCAGGACCCACCTGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237412:ENST00000449534:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains