MmuINT1027567 @ mm10
Intron Retention
Gene
ENSMUSG00000036480 | Prss56
Description
protease, serine 56 [Source:MGI Symbol;Acc:MGI:1916703]
Coordinates
chr1:87185894-87186433:+
Coord C1 exon
chr1:87185894-87186036
Coord A exon
chr1:87186037-87186270
Coord C2 exon
chr1:87186271-87186433
Length
234 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TGTTGGCTCTGGTCCCTTAGGGT
3' ss Score
8.62
Exon sequences
Seq C1 exon
ACGGGCCTGAGTCTGAGGCAGTGAGGGAGGCCCGCGTTCCGCTGCTCAGTGCAGACACCTGTCAAAAGGTCCTGGGGCCTGGGCTGCGGCCCAGCACCATGCTCTGCGCTGGTTACCTGGCAGGGGGCATCGACTCATGCCAG
Seq A exon
GTATGAGCTAAAACTGACAGGGGGCCCTGGGTGCGTCTCTCCCCTTGGCAAGATAACCCTGTTCTCTCTGGGTCTAGCTGAAAGCTCCTACCTACCGCTAAATCTTCCTAAATAAAATGGAAACAAGTAGTAATCACAGACGCAGCCAGAGCCAATCCTTCCCTACCAGGTACTAGGCAGATATAATTCGATCGATTGTGAATGCATTGCTCTCTGTTGGCTCTGGTCCCTTAG
Seq C2 exon
GGTGACTCCGGGGGCCCTTTAACCTGTTCCGAGCCCGGCCCGCGCCCCAGAGAGGTCCTCTTTGGAGTCACTTCTTGGGGAGATGGCTGTGGGGAACCAGGGAAGCCTGGGGTCTACACCCGTGTGACCGTGTTCAAAGACTGGCTGCAGGAGCAGATGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036480:ENSMUST00000044533:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.182
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.6=100)
A:
NA
C2:
PF0008921=Trypsin=PD(21.1=87.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGTCTGAGGCAGTGAGG
R:
GCTCCTGCAGCCAGTCTTTG
Band lengths:
292-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types