RnoINT0118824 @ rn6
Intron Retention
Gene
ENSRNOG00000029865 | Prss56
Description
serine protease 56 [Source:RGD Symbol;Acc:1563955]
Coordinates
chr9:94281565-94282104:+
Coord C1 exon
chr9:94281565-94281707
Coord A exon
chr9:94281708-94281941
Coord C2 exon
chr9:94281942-94282104
Length
234 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TGTTGGCTCTGGTCCCTTAGGGT
3' ss Score
8.62
Exon sequences
Seq C1 exon
ACGGGCCTGAGTCTGAGGCAGTGAGGGAGGCCCGCGTTCCGCTACTCAGTGCAGACACCTGTCAAAAGGCCCTGGGGCCTGGGCTGAGTCCCAGCACCATGCTCTGCGCTGGTTACCTGGCAGGGGGCATCGACTCATGCCAG
Seq A exon
GTATGAACTAAAAGTGACAGGGGCCCTGGATGTGTTGCTCCCCTTGGCAAGATAACCCTGTTCTCTCTGGGGTCTAGCTAAAAATTCCTACCAACCGCTAATTCTTCCTAAATAAAATGGAAACAAGTAGTAACCACAAACACGGCCAGAGCCGCCTTCCCCTACCAAGTACTAGGCAGGTATAATTCAGAGAAATGATGGATGCACTGCTTTCTGTTGGCTCTGGTCCCTTAG
Seq C2 exon
GGTGACTCCGGGGGCCCTTTAACCTGTTCTGAGCCCGGCCCGCGCCCCAGAGAGGTCCTCTTTGGAGTCACTTCTTGGGGAGATGGCTGTGGTGAGCCTGGGAAGCCTGGGGTCTATACCCGTGTGGCCGTGTTCAAAGACTGGCTGCAGGAGCAGATGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029865:ENSRNOT00000065805:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.182
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.6=100)
A:
NA
C2:
PF0008921=Trypsin=PD(21.1=87.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGTCTGAGGCAGTGAGG
R:
GCTCCTGCAGCCAGTCTTTG
Band lengths:
292-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]