MmuINT1027852 @ mm10
Intron Retention
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128502176-128503622:-
Coord C1 exon
chr6:128503473-128503622
Coord A exon
chr6:128502341-128503472
Coord C2 exon
chr6:128502176-128502340
Length
1132 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TGTTCTCCTCCAATGCACAGATC
3' ss Score
7.48
Exon sequences
Seq C1 exon
GTAAATTTGAGTTTCCCATCAGCACAGAGCCTGCCAGCCTCTGACACCCACCTGAAGGTCAAAGCCGCGCCTCTGTCCCTCTGTGCCCTCACTGCAGTAGACCAGAGTGTGCTGCTACTGAAGCCCGAAGCCAAGCTCTCACCTCAGTCA
Seq A exon
GTAAGTCCCACTGCAGTCTTGAGTATCAAAAGATGCTGACATGCCCAGACTGTTTTTGTAAACCATAACCACAAAGGACAAGATCCTCACAGAGATGAGCATGACGTCACCCCCCACAGTCACTGACCAGAGTGCTTTACAGACTCTCATTTTACCCTGGTGTTTCTTAACAAGTGAATAACAATTTGGGGTCTGTCTTATCACTTCATTTTACGAATGATAACACACAAATAGGATGGGTTAGTTTTGCTACAATACGTTTTAGAGAAGTTAAATTTCGTCTGGTCCATTTGCTAGCCGGCCACAACTCAAGGTGATTGTGTAAGATGCTAGGTCTTTTGTGCTTTCCCTGAAATCAGACACTTTACTGGTCTCAAGAGTGGGCAAGAACAGTTTCTTCTCAAACATGTCTTTAAAATGCCTTTGTGTTTCCAGAGAAGCGTCCTCATGTACAGGCTTCGAGAATGCCTCACGGGTTTTATGGTTAGCCTCTGCATCTTGCCTCCAGGTCCAGCCCTGTACAGACAAATGGTTCAGAAGTGATTTTGTTGTCTCTCAGTACCCATTATCCATCCTTTCTCTCTGCACCATGAACCTGAACACTGCCAGCCACTAACTCTGGTCTCCATATCCTTCTACTTTCAGATCAACTTTGATAAATTCACTTCAGTTGGTTTTTTTTTTGTTGTTGTTTTTGTTTTTGTTTTTTCAGAAAGAATCACACAAAGGTCTAGGCTGTCATTGAACTCAAAGGCTAAGGATGACCTTGAGTTTTCGGTCCTCATGCTTCTACCTCCCAAGTGCGGGGATTACACACCTGCAAGGGCATGCTAGTTTATGTAGTGCTGGAGATGAGATCCAAGGCTTCCTGCATGTTAGTTAGACAAGCATTCTACCAACTGAGCTACATCTCCATCTCCTATCTCTTCAAGTATTCTATTTTCCCATGAGGGCTAGAAACTTTGACATTCTATCTCTTTCTGTGACTCCCTGCTTCAATCCTTGTATAATACACATGGCAAGGGTAACTAAAACCATGGTGACTTAAATTCCATATCGAACATTGCCACATTAAAATTCTTTAAGCAGTAGAACAAGAAACAGTTTACCTTTGTTCTCCTCCAATGCACAG
Seq C2 exon
ATCTACAATTTGCTGCCAGGAAAGACTGTCCAGGGTGCCTTCTTTGGTGTCCCAGTGTACAAAGACCATGAGAACTGCATCAGCGGAGAAGACATCACTCACAATGGGATCGTGTACACGCCAAAGCACTCTCTGGGCGATAATGATGCACACAGCATTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359:ENSMUST00000112132:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=PD(26.2=78.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGAGTTTCCCATCAGCACAGA
R:
GCTGTGTGCATCATTATCGCC
Band lengths:
302-1434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types