MmuINT1030704 @ mm10
Intron Retention
Gene
ENSMUSG00000046201 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:MGI Symbol;Acc:MGI:1925212]
Coordinates
chr17:3193014-3195993:+
Coord C1 exon
chr17:3193014-3193082
Coord A exon
chr17:3193083-3195777
Coord C2 exon
chr17:3195778-3195993
Length
2695 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TTTTTGTCTGATTTAAACAGCTT
3' ss Score
7.23
Exon sequences
Seq C1 exon
GTTTTATGCCACCTCCAGTTCCCCCACCTGTGGTACCTCCCCCTGCAATCCCACCGGTAGTACCAACAT
Seq A exon
GTGAGTTTTTGATTTACAAAGTGATTTACAAAGTCTGTTTTATTCTAGGGAGTCTTGTATGTTTGTGCTCATTCCTATAAAATACTGGTTTTTCAACGAACATGTGTTCAATGATTCTGAACATTGACAGCATCTCACAGTTCTTACTCATATATAGTCTCAGTTGTCATTGCATAACCTGCTCCCCTTAGTCAAGAGAAGCCATCCATTGTCATTGTGATTTTGCTTGGTTGCGTTTACTGTAAATGTCTTCCTCTAGAGCCCTGCTGCTCAGCTGCTTTCTAGATACAAGACTGCTGTAAGGTGGAAGTTAGTGCCAAGGACTTGTTTGTTTATATCATGGATCACCTTTTCCCCACAAGGACACAGCAACATGTCCTAGACTCGTACCATATCTCACTAGTGTCTTTCTGTTCATTTTGAATAAACAGATACTTTTTAACAAAACCAAGCAGAAAGTACAGAAATTATTTGTGTGCCTCTGTCCTGGCTTGTGCCAGAACATCATCTCCACTTATTACCATCCCCACTAGAGTGGACCTAGGCAGAGTAGATTGACTATCTATATACCTTAGGTATAATTCTGATACATAATTTATACTATGGTTTGCTAACTTATTTAACAGTGTTAAGATTGAGGATATCCAGGTATTGCAATGAAACCATTGAAATAAATGTTTGCCTGTTAAGTTTTTAATTGTTTGTATTTGTTGATTATTGTTAGTTAAATCCATTTATCATTATTAATTGCAAATTAGTTATCTTTCTAAGTAGTACTTCCTTCTGCATTCCTTTCTTAAGGTTTTAATGTAGATGTAGTGAAAACTTGCCAGGTGATGGTGATTAGTCATCTTGCAGTGTAGAGCACAGGAAGGTCAAGATAGATACCAAACAAACCCTTCGCTAGCTGCCAGAGTGCACAGTTCGGAGTGTGGGACTCCAGTAGTAGCAGGTGTCGGAGGGCAGGAAAGGTTCTGTTATTTTCTTCCTTGATCCCCACGGCCCTTTGTGTTTTCATGTTTTATCTGTGCACTAATGGGCCAACACGTTGCTTCCTATCAGTTGCCTTCTCTGTTCTGTGTTGAGATGCTTTCCCTTCGCCTGTGCTGCTTCTCTGTGCCTTGCACTTAGTCACCCTTGCTTCTGAGAGGGTCCTGGGTCTTTCAGCCTGACTGTCCCCAAGCCATACTGTGTCTCACTGTAGTCTGACCTAGACACTTCTAATGCCAAAGGACATTAGCAGACCACAGTCAGGCTACCGGGTTGCTTGCTCTGAGGGTTTTATTGGGTGGAAAGCTGGGGATTATTATGTATTTTGAACAGAGAAAGTATAAATGTGCACGATGAAACATAGCTTCAAGTGTAAGTTTCAGAGCGATTTACTTAGCTACTTTATTATACTTCTCTCTGTTGTCCCACTGAAATGAATATTTACCTCCTCCCCTTACTGAGTCATAGACACTGGAAGTAATAAAACGGATGGTATTGCCCTCCAGACTTCTGGAGAAACTAGGTTCTCTGCTGCCTTCTTGGCCTTCAAGGTGCATATGTTGCCATACTAATCAGAAAGATTACAAAAACAAATACTAATAGACATTTAAGTATCTTAATTTTCTATTTCCTGTTTCCTGTTACTAAACACAGGGTTTCTGAGCAAGCATTTGGTTATTTTGGACAATCCTGCTTTAAAAATTAGATTCTAAAAAGACCTTTTATGAGAGTACATATAATAAATAAAGATGTCTATTAATTTCTTAAAAATCTAAATCCATTTCCTTTATGTTTTAAAATGTTTTCCTCATTATTTAGACAACTTTCAATTCTTCTGAAAATTTCAGTGTTCAGAAGCTGATTTTTAATTCTCTATCCAAAGAGCCCTGCCTCTAATAACTATAGTAAGGAATTATGCTGCAATTCTTGTCTCACTTGATTCCCATAGTCTTCTGTTCCAGTGTTCCTTCTCTGGAGTGCACTGACCATTTATCCAGGTATTTCTGATGTGAATAGGATGGGGATACCCTTGCTTAAAGTGTCCAAGGATGACCCAGCAGTTCTCTATACAACTCCCACTGAATTAGACCTTCTAAGAGTGTGTTAGGTCCCTGTTGTTCTGCCTTTTAGTGTATAGGTTACATGTACATGGAGAGAGAGTTTTTTTGTTTTTGTTTTGTTCTTTTACCAAGTGCTTAGGAATAGAGTTTATAGCTTTATATTTAAACTTCATCTTGCCTAATTAACCTTCACTTAAAGAAAGTAATGTGAATATAAAGATACCCCAATACACACACACACACACACACACACACACACACACACACACGTTGTAATTTCAAGAACATTGGCCAGAAACTTTCATTCTGATATCTACATGTCTGTCTGCTAATCATTTCTGTGTATTTAGTATTCACTTAGCTGGCATTCTTAGAAAATTAGATTTTTTTTTAAGTGTTACAAGGAGTCCTCCTGTTCCAGACTCTTGGTGAAAATATCTTATAAAATTGTTTTCTTATTCTAGAAGAGTGAAGCCTTGTACATATTGCTGAGCTGCCTCATTATGACTAGTCATTTTAAGCATTGGTTATTGCACAATGTGCTTAGTAATGCAGGGATGCCACTAAGTAAACACTAGAGTTACCAGAAAACTTAGCTTACAGATTGATTAAGTCTGAAATAAATTTTTGTCTGATTTAAACAG
Seq C2 exon
CTTTAGTGCAACCACCATTGTCCATGACCCCTGAAGCTGTGAAAGATGTTGGATTTGGCAGCCTGGTTTTACCAAGTGGTTCTGTTGCTGGCAGTCTTGCTCCTTCAACTCTACCAGCTGGAAATGTTTTTAATCCTCCCAGTAAAGCAGAGCCTGAAGAAAAAGTACCTCACCTTATAGAGCACCAGATTCCTTCTGGTGAGAACACAAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046201:ENSMUST00000076734:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.708 A=NA C2=0.685
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types