RnoINT0131085 @ rn6
Intron Retention
Gene
ENSRNOG00000016919 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:RGD Symbol;Acc:708362]
Coordinates
chr1:44114696-44117744:+
Coord C1 exon
chr1:44114696-44114764
Coord A exon
chr1:44114765-44117528
Coord C2 exon
chr1:44117529-44117744
Length
2764 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TTTTTGTCCTGTTTAAACAGCTT
3' ss Score
8.49
Exon sequences
Seq C1 exon
GTTTTATGCCACCTCCAGTTCCCCCACCTGTGGTACCTCCCCCTGCAATCCCACCCGTAGTACCAACAT
Seq A exon
GTGAGTTTTTGACTTACAAAGTCTGTTTTATTCTAGGGAGTCTTAGTATGTTTGTGCTCATTCCTGTAAAATGCTAGTTGCTCAACAAACACGTGTTCGATGATTTCTGAAAATTGACAGCCTCTCACAGGTTCTTACTCATGTTCTCAGTTGTCTCACACTGTCATTCCATAGTCTGCTTCCTTTAGTCAGGATCCAGAGAAGTCATCCTGTTACCATTGTGATTTTGCTTTGTTGTGTTTATTATAAATGTCTTCCTCCAGCGCCCTCCTGCCTGGTCTCCCTTCCAGTTCATAGTCCTTGACTACTGCTCAGCTGCTTCCTAGGTACAAGATGTTGTAAGGGGGGAATTAGTGCTGAGGACTTGTTTATTACATCGTGGATCATGTTTTCCCACAAGGACACAGCAACATGTCTTAGACATGCATCTTGTCATACTAGTGTCTGTTCATTTTGAACAAGACAGACAATACTTTTTAACAAAACCAAGCAGAAAGTACAGAAATTATTTGTGTGCCTCTGTCCTGGCTCATGCCGGGACATCATCTCCACTTGTTACCATCCCCACTAGAGTGGACCGAGTTAGACTGGATGAATCTATTTATACCTCAGGGTAATTTTTTTTTTCCTTTTTTTCTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCCAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCCAGGGTAATTCTAGTACAGAATTTATATTATGGTTTGCTTACACTTGGAGGTTTCTAACATATTTAACAATGTTAACACTTGATGAGGATATTCAGGTATTGCAATTAAGTAATTGAAATGTTTGCCGATTAAGTTTTTAATGTTTTTATTTGTTGATTATTGTTGACCAAATCTGTTTATCATTATTAATTGAAAATTGCTAATCTTTCTAAGTAGTAAGTCCTTCTTCATTCCTTTGTTGGGATTTTTTTTTTTTTAATGTAATGGAAACTTGCCAGGTGATGGTGATTAGTGACCTTGAGGTGTAGTGCACAGGAAGGTCACCATACATAACAACATGCACAGTTCAGAGTGCATGACTCTAGTAATAGCAGGTGACAGAAGGACAGGAATCCCCACTGCCCTTTTGTGTGTTCGTTGTTTATATGTGTATTAATGGACTAATACAGTACTTCCTATCCACGGTCTTCTCTGTTCTTGTGTTGAGATGCTTTTCCCTTTACCTGTGTTGCTTCTCTGTGCCTTGCATTTAGTCACCATCTCATCTGAGAGGGTCCCAGGCTTTTCATCCTGATTGTCCCCAAGTCATACTGTGTCTTAATGTAGTCTGAACCAGACTCGTGTGATGCAGAAGGACATTTACAGGCCACAGTCAGGCTGCTAGATCTTGTTTGCTCTGAGGGCTGTTATGTGGAAAGTGTTTGAGTGGGCAAAGCTGGGGGTGATGTAGTTTGAATAAAAAGAGTAGAAATGTGTATGATAAAACAGAGCTTCAAGTACAAGTTTACAGGGTGTTGTACTTGGCTTCTTTTTATACTTCTCTCTGTTGTCACACTGAAACGAATGTTTACCTCCTCTCCTTACTATGAGTCATAGACAGGAAGTAGTAAACGGATGGTACTGCCCTCCAGACTTCTGAAGAAACTAGGTTCTTTGCTGCTTTCTTGGCCTTCAGAGTACATGTATTGCCATCCTAATCAGAAGGATTACAAAAACGAATATTTACAGGCATTTAAGTATCTTAAATTTCTACTTCCTGTTTCCTGTTAATAAACATAGGGTTTCTGCGCAAGCATTTAGTTATTTTGGAAAATCCTGCTTTAAAAATTTGATTACAGAAGACTTTCTATGAGAGCACAAATAATAATAGAGATGTCTATTGATTTCTTATAACTCTAAATCCATTTTCTTTATATTCTAAAATGTTGTCCTCATGATTTAGGTAGCATTCAATTTTTTCTGAAAATTGTAGTGTTCAGAAGTTTTTTGTTTGTTTGTTTGTTTTTTTAATTTGCCACCCAAAGAGGCCTGCCTCTCAATAACTATAGCAAGGGATTGTGCTGCTCTTCCTGTCTCACTTGATCCCCATGATCTCTATTCAGTCTTAGTTGTCTGTAGTAGATGCACCATTTGCCCAGGTGTTTCTGAGGTGAATGGGATGGGGTCACCCTTGCTTAAAGTGTCCAGGGATGACCCAGCAATTTTCTGTTAGATTTCTGTTGTTCAGCCTGCTAATGTATAGGTTACATAGACGTGGAGAGGGGTGTTTTTACCAAGTGCTTTTGACTAGAATGTTGATAGCGTTACATTTAGAGTTCACCTTGCTGACTAACCTTGCTCGATGAAGGTAGTGAATATAAAGGACTCCCCACCCTATACTCACACATTGTAATTTCAAGATTGGCCAGAGTCTTTCATTCTCACATCCACTTGTCTGTCTGCTAGTCATTTCTGTGTATTTAGTGTTAACTAGGCTGGCGTTCTCAGAGAATTAGTTTTTTTATGTTACTAGGATAGTCTTCACCAGTGAGTCCTCCTGTACCAGACTTTTGGTGAAAATATTTCATAAAATTGTTTTCTTATTCTAAAAGAGTAAAGCCTTATACGTAGAGCTGAGCCTCCTTGTTATGACTAGTAATTTTGAGCATTGATTATTATACATTGTGCTTAGTAATGCAGGGATGCCACTAAGTAAACACTTGAGTTACCAGAAAACTTAGCTTATAAATTGATTAAGTCTGAAATAAATTTTTGTCCTGTTTAAACAG
Seq C2 exon
CTTTAGTGCAACCACCATTGTCTATGACCCCAGAAACTGTGAAAGATGTTGGATTTGGCAGCCTTGTTTTACCAGGTGGTTCTGTTGCTGGCAATCTTGCTCCTTCAACTCTACCAGCTGGAAATGTTTTTAATCCTCCCAGTAAAGCAGAGCCTGAAGAAAAAGTACCTCACCTTACAGAACACCAGATTCCTTCTGGTGAGAATACCAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016919:ENSRNOT00000065733:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.927
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]