RnoEX0078272 @ rn6
Exon Skipping
Gene
ENSRNOG00000016919 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:RGD Symbol;Acc:708362]
Coordinates
chr1:44113681-44117744:+
Coord C1 exon
chr1:44113681-44113825
Coord A exon
chr1:44114696-44114764
Coord C2 exon
chr1:44117529-44117744
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTCTTCCATGTAGGTT
3' ss Score
11.75
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
ATTCCTGTAGCACCAACCGTTCCTGCAGTTAGCTTAGTTCCACCAGCGTTTCCTGTGTCGATGCCTGTCCCCCCTCCTGGATTCAGCCCCATCCCTCCACCTCCTTTTCTACGAGCAAGTTTTAACCCTTCACAACCACCTCCTG
Seq A exon
GTTTTATGCCACCTCCAGTTCCCCCACCTGTGGTACCTCCCCCTGCAATCCCACCCGTAGTACCAACAT
Seq C2 exon
CTTTAGTGCAACCACCATTGTCTATGACCCCAGAAACTGTGAAAGATGTTGGATTTGGCAGCCTTGTTTTACCAGGTGGTTCTGTTGCTGGCAATCTTGCTCCTTCAACTCTACCAGCTGGAAATGTTTTTAATCCTCCCAGTAAAGCAGAGCCTGAAGAAAAAGTACCTCACCTTACAGAACACCAGATTCCTTCTGGTGAGAATACCAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016919_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.510 A=1.000 C2=0.927
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCTGTGTCGATGCCTGT
R:
CCTGGTAAAACAAGGCTGCCA
Band lengths:
174-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]