DreEX6056182 @ danRer10
Exon Skipping
Gene
ENSDARG00000100056 | scaf8
Description
SR-related CTD-associated factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-3703]
Coordinates
chr17:48859460-48860064:+
Coord C1 exon
chr17:48859460-48859598
Coord A exon
chr17:48859684-48859755
Coord C2 exon
chr17:48859840-48860064
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGTGGGTTCCTCTCTTGCAGGTT
3' ss Score
12.14
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
ATTCCAGTGCCACAGACAGTCCCTGCTGTTGGCCTCGTTCCTCCATCCTTCCCTGTCACCATGGCAATGCCCCCACCAGGCTTCGGTCCCCCTCCACCTTTTCTAAGGGCAGGGTTTAATGCCTCCCAGCCTCCCCCAG
Seq A exon
GTTTCATGGCCACACCAGGAGTAGGGCCGTCAGCAGTGGGGGCAGTCACCAGTCTCGCTTCAGCTCAGAACT
Seq C2 exon
CTTTAGTACAGCCTGCGATGCCAAACACTCAAGACAGCAGCAAGGATTCTCCGTTTGGTGCCATGATGCCTCCCACCGGTACTATTCCTGGGAGCTTTATTCCATCAGCAATGCCTGGGGCACAAGTCTTTAACCCTGTCGGAGCACAGCATCAGCAGAGCAGCACAGACAAAACACCTCAGTCTGCAGACGCTATGGAGGCATCTTCTGAAATAACACTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100056-'19-22,'19-21,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.851 A=0.920 C2=0.961
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTTCCTCCATCCTTCCCT
R:
ATGGCACCAAACGGAGAATCC
Band lengths:
170-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]