BtaEX6050092 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031917 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr9:92865889-92870962:+
Coord C1 exon
chr9:92865889-92866033
Coord A exon
chr9:92867878-92867946
Coord C2 exon
chr9:92870744-92870962
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTCCCCCATGCAGGTT
3' ss Score
12.03
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
ATTCCGGTAGCTCCAGCAGTGCCTGCAGTTAATTTAGTACCACCAACATTTCCTGTGTCAATGCCAGTTCCTCCTCCCGGCTTCAGTCCAATCCCTCCGCCTCCTTTTCTCCGAGCAAGTTTCAACCCTTCACAACCACCGCCTG
Seq A exon
GTTTCATGCCTCCTCCAGTTCCACCCCCTGTTGTACCACCACCTACTATCCCACCAGTAGTACCAACAT
Seq C2 exon
CTTTAGTGCAGCCGCCATTATCTATGACTCCAGAAACTGTGAAAGATGTTGGATTTGGTAGCCTTGTTTTACCAGGTGGTTCTGTTGCCAGCAGTCTTGCTACTGCCACTCTGCCAGCTGGAAATGTTTTTAATCCTCCAACGAAACAAGCAGAGCCTGAAGAAAAAGTACCTCATCTTATTGATCACCAGATTTCTTCTGCAGAAAACACCAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031917-'25-25,'25-24,27-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=1.000 C2=0.784
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATCCCTCCGCCTCCTTTTC
R:
GCAGAGTGGCAGTAGCAAGAC
Band lengths:
171-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]