HsaEX6050102 @ hg38
Exon Skipping
Gene
ENSG00000213079 | SCAF8
Description
SR-related CTD associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr6:154824234-154831140:+
Coord C1 exon
chr6:154824234-154824378
Coord A exon
chr6:154827172-154827240
Coord C2 exon
chr6:154830922-154831140
Length
69 bp
Sequences
Splice sites
3' ss Seq
GGGTTTTTTTTTCTGTCTAGGTT
3' ss Score
9.58
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
ATTCCAGTGGCGCCAGCCGTGCCTACAGTTAGTTTAGTCCCACCAGCATTTCCTGTGTCGATGCCGGTTCCTCCTCCTGGATTCAGTCCAATCCCTCCACCTCCTTTTTTAAGAGCAAGTTTTAACCCTTCACAACCACCACCTG
Seq A exon
GTTTCATGCCGCCTCCAGTTCCCCCACCTGTTGTGCCACCCCCTACGATTCCACCAGTAGTACCAACAT
Seq C2 exon
CTTTAGTGCAGCCGTCATTATCCATGACACCGGAAACTGTGAAAGATGTTGGATTTGGTAGCCTTGTTATACCAGGCGGTTCTGTTGCCAGCAATCTTGCTACTTCCGCTCTGCCAGCTGGAAATGTTTTTAATGCTCCAACTAAACAGGCAGAGCCTGAAGAAAAAGTACCTCATCTTATAGACCACCAGATTTCTTCTGGTGAAAACACCAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213079-'52-58,'52-55,54-58
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.490 A=0.992 C2=0.641
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTCCAATCCCTCCACCTC
R:
GCAGAGCGGAAGTAGCAAGAT
Band lengths:
177-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains