MmuEX0041114 @ mm9
Exon Skipping
Gene
ENSMUSG00000046201 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:MGI Symbol;Acc:MGI:1925212]
Coordinates
chr17:3191817-3195993:+
Coord C1 exon
chr17:3191817-3191961
Coord A exon
chr17:3193014-3193082
Coord C2 exon
chr17:3195778-3195993
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTCTCCCATGTAGGTT
3' ss Score
11.97
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
ATTCCTGTAGCACCAGCTGTTCCTGCAGTTAGCTTAGTTCCTCCAGCGTTTCCTGTGTCGATGCCTGTCCCCCCTCCTGGATTCAACCCGATCCCTCCACCTCCTTTTCTACGAGCAAGTTTTAACCCTTCACAACCACCTCCTG
Seq A exon
GTTTTATGCCACCTCCAGTTCCCCCACCTGTGGTACCTCCCCCTGCAATCCCACCGGTAGTACCAACAT
Seq C2 exon
CTTTAGTGCAACCACCATTGTCCATGACCCCTGAAGCTGTGAAAGATGTTGGATTTGGCAGCCTGGTTTTACCAAGTGGTTCTGTTGCTGGCAGTCTTGCTCCTTCAACTCTACCAGCTGGAAATGTTTTTAATCCTCCCAGTAAAGCAGAGCCTGAAGAAAAAGTACCTCACCTTATAGAGCACCAGATTCCTTCTGGTGAGAACACAAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046201-'27-31,'27-30,28-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.490 A=0.708 C2=0.685
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCTGTGTCGATGCCTGT
R:
AAACCAGGCTGCCAAATCCAA
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: