GgaEX1050982 @ galGal4
Exon Skipping
Gene
ENSGALG00000013635 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr3:49631823-49633477:+
Coord C1 exon
chr3:49631823-49631973
Coord A exon
chr3:49632558-49632638
Coord C2 exon
chr3:49633253-49633477
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTGTAAATTTTCCATATAGGTT
3' ss Score
8.71
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
AAAAAGATTCCAGTAGCTCCAGCTGTGCCTGCTGTTAGCTTAGTTCCACCTGCATTTCCTGTCACAATGTCTGTCCCTCCTCCTGGTTATAGTGCCATTCCTCCTCCACCCTTCTTGCGAGCAAGTTTCAATCCTTCACAGCCACCTCCAG
Seq A exon
GTTTTATGCCTCCCCCAGTTCCTCCTGTTGTCCCTCCTCCTGTTGTGCCACCACCTGTTGTACCACCAGTTGTTCCAACAT
Seq C2 exon
CTTTAGTACAGCCTCCATTGCCAATTACTCAAGAGACGATGAAGGATGTACCTTTTACTGGCCTGGTTCTACCAGTTGTTGGCACAGTTAGTAGCAATCTAGCCACTCCAACGTTATCTTCTGGAAGCATCTTTAATCCTTTGCCAATCAACAAACAAGAATCTGATGAAAAGGGATCTCATCTTACAGACCTTCAGATTTCTTCCAGTGAAAATGGTAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635-'21-33,'21-31,22-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=0.857 C2=0.697
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTCCTCCTCCACCCTTCT
R:
ACGTTGGAGTGGCTAGATTGC
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]