MmuINT1033814 @ mm10
Intron Retention
Gene
ENSMUSG00000070332 | Trim80
Description
tripartite motif-containing 80 [Source:MGI Symbol;Acc:MGI:3588186]
Coordinates
chr11:115440707-115441745:+
Coord C1 exon
chr11:115440707-115440750
Coord A exon
chr11:115440751-115441080
Coord C2 exon
chr11:115441081-115441745
Length
330 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
ATTTTTCTCTGTCTTCTCAGGAT
3' ss Score
10.92
Exon sequences
Seq C1 exon
GGCAACAAAATATCTGGCTCTCATGGACATGCAGAAGATCTCAA
Seq A exon
GTGAGTTCAAGCTCCTGACCTTCCCTCCTAAGTGCCAAGGGAGTGGCCTCTCCCCCAGAGCATCTTGTCCTTCCTTCTGCCTTTCACCACCTCCCCCACAACTGGGGCTGAGACCAGGAAGTAAGATGCTCAGTGCCCACCCACATGGGGGTTGGCTGCCTATGCAGTCCTGGTTCCCTATGGTCAGACATCTGCTTCCAAAAGAAAGATGTAAAAAGGAGTATGCCTATGACATAAAGAACATGCCCCTGATGTGCAAGACCATGTCCCTGGGGTAAAGGGCCATGCCCTGGCCCCCTGCCATGCCCGGATTTTTCTCTGTCTTCTCAG
Seq C2 exon
GATCAGCCCAGGACAAACCCCCCTCACAGCTCTCTTCCCAGCCCTCCAGAACCCCGCTCCATCTCCTGATGGGCAGCAACAGCAGTCAGCACATGTTGGAAGACCAAGTCCTCTGTCCCATTTGCCTGGAGGTGTTCTGCAACCCAGTCACTACCGCCTGCGGCCATAACTTCTGTATGACTTGCCTTCAGAATTTCTGGGACCACCAGGCTGCCATTGGAGAGACTTACTATTGCCCCCAGTGCAGAGAGGCCTTCTCCAGCAGGCCCCGCCTCTGCAAGAACGTCATCCTCGGGGAGATGGTGGCTTGCTTCACCCAGGCCAAGAGCCAGACCTCAGGGTCCTTGTGGGGCCTGGCTGGCCCCACAGATGTGCCCTGTGACTTTTGCTCTCCGCAGAAGCTGAGGGCAGCCAAGTCATGCCTGCAGTGTGTGGCTTCCTTGTGTGAGAAACATCTGCGCAGCCACTTTGAGGACCAGCTGTTCCAGGACCACCAGCTGTTGGACCCAGTGTGGGACCTCACGAACCGCTTGTGCCGCAAGCATCGCAAGCTCCGGCAGCTGTATTGCCGCACGGAGGGCAGCTGCGTGTGCGGAGCCTGCCTATTGGAGGAGCACAAGAACCATGACACCACCCCCCTGGAGGATGAACGGGCCCGCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070332:ENSMUST00000093914:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF152271=zf-C3HC4_4=WD(100=19.8),PF0064319=zf-B_box=WD(100=18.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTCTCATGGACATGCAG
R:
GTGAAGCAAGCCACCATCTCC
Band lengths:
347-677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types