MmuINT1035488 @ mm10
Intron Retention
Gene
ENSMUSG00000053985 | Zfp14
Description
zinc finger protein 14 [Source:MGI Symbol;Acc:MGI:99160]
Coordinates
chr7:30036891-30043656:-
Coord C1 exon
chr7:30043530-30043656
Coord A exon
chr7:30039417-30043529
Coord C2 exon
chr7:30036891-30039416
Length
4113 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TCTTTCTTGTTCTCTTTCAGATT
3' ss Score
13.64
Exon sequences
Seq C1 exon
GGTTTAGTGACGTTTGGGGATGTGGCTGTGGATTTCTCTCAGGAGGAGTGGGAATTCCTGGACCCTGCTCAGAAGAACCTGTACAGGGATGTGATGTGGGAGACCTATAGCAATTTTATTTCACTGG
Seq A exon
GTGAGTTATCTATCCCAGAGGATTTGCTTTCTCTCCTGTGCTAACAGGCTTCATTTTTATTTTCTGTTCAGTAGATTAGAAACTGGTGTTTGCATTTAACATCTAGTCACTTTGGCCTGGGTATCCCTTCTCACTTTCTTCAGACTCTGGCTTCCTGTGTGTTGTTTCCCTGTTATCTGCATTTCACATGGCAGAAGTATTTTATACGAACCCAGAATCAATGTACACACTTCCTCTTCTTTCTGATGTCAAAGGCAATGAATGTGGGCGGATGCAAACTTAAAACTCAAAGAAGCAAGTTTTGGTTCAGTTCTGGTGACAGACTGCTGGCATTCTTCCCATTTTACATCCAAAAGTTAAAAATCTGGCCTGGTGCTGTAGCTCAGTGTTAAGAGTACTTGCCTAGCATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCGTCCCTGAGTTCAATCCCCACTGCTGCAAAAATAGTTAAAAGTCCAAGTGGACTGAAGAGATGGCTCGGTGGGTAAGAGCACTGGCTGTTCTTCCAGAGGTCCTGAGTTCAGTTCCCAGGAACCACATGGTGGTTCATGACCACCTGTAATGGAATCTGATGCCCTCTTCTGGAATGTGTGACAGTAGATTATTCATAAACATACAATAAGTTTTTAGAAAGTCTAAGCATTTTGTATATTCCAGTAGACAGACCTACTAGGAAGGGTGTGTCACTGTGTCTGGAAGCATCATACCCTCTCAGTGAGCACACATAACTAAAGCGTATGTGTTCCTTGTACTTAGTGATTAGTCGCTGTCCTGGGTGTTCTATGGTTACTACATTGTCACAGCTGCTCTGAGAGAAGTGGTGTATCATCCTCAACACGGATGAGAACACTCCAGCACAGAGGTGGGGGCTGAGGAGATGGCTCCTGGGTAAAGCACTTGTGCAGATGTGAGGGCCTGAGTTCAAGTCCTCAGATGCATGGAACATGGAGTAGGAGGCGCATCTATAATCCCAGCACTGCTACAGTAAGGTAGGAGGGAGAAACAGGAGGGTCCAGGGAGGCACCCAGGCACCCAGCCTGATAAACTCAGCAATGAAGATCAAAAGAGACCTATTTATATCAGTGGAAAACCCACTCAGTCAGTCAAGAGGTCGAGGGAAGGAGTGAGGATTAAAGAAAACAGAGACAATTGGACAACACTATAACATGACCCCAGCAAGTACTGAAGTGGGTTTATTATTTCCTAGTCTGCTTTTATACCATTTTAGGAACATGCAAAGAATAGGGTCCGTTCTAAGGCATAAGCAAAGTAGTAAAGAAACAATCAAGGCACAAGCCAAGGCCCCATGGCACTCGGGGACGTATCAAGGCGATCAAGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTTGTTACAGATGGTTGTGAGCCATCATGTGGTTGCTGGGATTTGAACTTCAAACCTTTGGAAGAGCAATCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCGGCGATCAAGATCTTGAGCCTCCGTCCTTGTCCTAACCCAATGTCAGATTCATGCCAATATCCTTGATGCAGGACCAAGGGCTCTCCACATCTCCCCCTTTTTATTTCATAAACAAGACTGCGTCTGTCTTAGGTTGTTCTGATGAGAATGTCTTACTTACCTGTCATTGAAAATGCATCATCCAAGGCAATACATTTATGTCTTAGGTTGGCAAGGTTCTGTGCAGAATCTTACCCATCTTTGACTGCAAACCTGTTAAACTAGCAGCTCTGTCTGGGGATCTATTTTAAGTTTCGAGCCGTGTATTTTGGCCACTGACATGTTGATGTTGTTTAAGGCAAGTTTTATCAAAATGGGCAGGAATAAAAGTATTCCCAGGACAAGAAGGGCCAACATGGTCAAACTATATAAGCCATTTTTGAAGCTTGACCAAGGTGGAATTACTGACCTTAAGTCACAAATAATTTTATCAGCTGTATCTGCAGCATCAAAGCTCAGCAGAGCAGCATTCTTTAAATTTATACTCGGTATGCAAAGTTAAACATCCAGAATTATGCCAAATACCCTGCAAGTACCCTACCAATTATAGTGGCTGTCATTGTAAATTCTAGAAGTGACACAAATCCATTGGTATTTACTGTGACACTTGAGATGGCTTCTTACTCTTAAACTCTGAACCTCCTCTCCAGTAATTTGAACAGTATCATAAAGAACATCGATCCGTTGTTCTAAACACCAATCTAAATCCTCTTGAATACCCAGAGCAGTAGCAACATTTTTTGCTAAATGATTAACAAAAGTGGCTGTCTAACTTCTTGCATCCAAGCAATTGCAGAAACAATGGTGCTAGCTAAACAAGATCAACAAAAGAAACTATATGGTTATCTGTATTAATGTAAAGACACTACACCACAAAACTCAGCATCCATTCCTGATCCAAAACAGGCAAACCAACCAACCTACTTGTGGGCTGGGCGTGGTGGTGTGTGCCTGGAGCCTGGTGGAGGCTGGTGTAGGTGTGGCCTCTCTTGTTGGTCTTCAGGTTTCTTTTCTTTTATGTGTGTTGAGAAAACATTCATGTGTGAGGATGAGCATCTGTGTGTTGTGTGCTTGTTTGTGTGTGTGTGTGTGTGCATGTAGAGACAGAGATCTATGTATGGTATCTTCTTTAGTGGCATATTTACTTTATTTTTTAGACATAGCCACAGCGAACCTGGAACTCATTGAATTGGCTAGAATGGCATGCTAGCAAATGCCCAGGGCTCCTCATCCTCTTGCCTAGTGCTAGAATGACAGAATACTGCCACCCCTGGCTTCTTACATGGGAGCTGGGGATATAAGCTCAGGGTTGCATGCTGCATGCTCAGTCAGCTGTTGTCTCGGCTCCTCGAGGCTTTCCTCCATCCATCTGCTGGTCCCTCCCTCCCTTCAGTGGCCCAGAATTCCCAGAGACCCACCTGACTCTGTCTCCTATAACTGGGATTAAATGTACCACCATACCTGGCTATAATTCATTCCTTCTTTCCTTCTTTCTTTCCTTTCTTTTCTTTTTCTTTCCTTTTTCCTTTCCTTCTTTTCTTTTCTTCCTTCCTTCCTTTCTATCTTTCTTTCTTTTTTGGAGACAAGGTCTCCAGTATCCCATGCTGGACCTGAACTCACTGTGTATCCAAGGAAGACCTTGCATTTCTGATCCTCTTGCTTCCACCTCCCTGCTGGAATTATTATAGTCAAGCACCACCACACCCAGCTTGGTGTCTGTCTGTCTACCTATCTATCTATGAGATGGAATCTATCTATCTATCTACCTATCTACCTATCTACCTATCTACCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTGTGAGATGGAATCTCCTATGTTGCCCAGGTTGGCTTCTAACTCTTTGGGTCAAGTAATGCTTCTCCCTTAATCTCCCTGGAAGCTGGGAAAATAAGCACCCATCACACACAATTCAGCTTTCTTTTTAGCGATGATCTTACTTTGTAGCTCAGGCTGTCCTGAGACTCTGTGTAGCCCAGGCTAGGATCCCCCTGAGTGCTGGGATTGCAGATGTGAGCCTGCTTGGATTTATTTTCACATGTGCTGTCTCTGCATCTGAAACAGGGCCTTAATTTTTATTTATTTTAATATTCATGAAGTGAGCTTTGGCAACAATGATTAGCCTTACCCCCTTGGCAGAGCAACTATAGTATTGTTAGTGTTTTGCTGATATAGCTCTGTACAGTTGTGTGTCAACTCCTGCTGTTTTTCCCATAAACTTAATTATTTTTGGTGCAGGATTTTGTGTAGGATATGGTTTTGGGACACACATAGGTAGTATTTTTTTTTTCCCAGAAATGCCTGTTTGCAGGAGGTACGGTCTATCACTTATAGTAGGCATTGCTTTAGGCCCTGCCATCTGTCTATAGAAATTTTCTTCCTTCTGGAACAGAGAAGCAGTGTGTTTCTTTCTTGTTCTCTTTCAG
Seq C2 exon
ATTTGGAGTCTAGATTCAAGACCGATACTTCATCTTCAGACAAGGGCATTTGTGAAGTATATTCGTTACAGTGGGAGTTGATTGAGAAAATTAAAAACCTAAGCCCTCAGGGTTCTGGTCTTAGTGATGATCAGGAATGTAAACACAAGACTGGGCTACAAAAGGAACCGCAGGAGGGTTATTTTGGGCAGTTGAAAATTACCTCTGAAAAAGTCACATATGAAAAGCACAGTTTCCTTTCTGAGTACCAGAGAGTTCAGAATGGAGAAAAGTTCTATGAATGTAAAGAGTGTAGGAAGACCTTTATCCGCCGCTCAACGCTTAGTCAGCACTTGAGGATCCACACCGGCGAGAAACCTTACAAATGCAAGGAGTGTGGGCAACCCTTCAGACAGCGGGCGCACCTTATCCGACATCACAAACTTCACACCGGTGAGAAGCCCTATGAGTGTAAGGACTGTGGGAAGGCCTTTACAGTGCTCCAGGAACTCACACAGCACCAGCGTCTTCACACTGGTGAGAAGCCGTACGAATGCAAGGAATGTGGAAAGGCCTTCCGGGTCCATCAGCAGCTGGCTCGGCATCAGAGGATTCACACTGGGGAAAAGCCCTATGAGTGCAAGGAGTGTGGGAAGACCTTCAGACAGTGCACACACCTTACCCGACACCAGAGACTTCACACTTCTGAGAAACTCTATGAATGTAAGGAGTGTGGGAAAGCCTTCGTGTGTGGCCCAGACCTTCGAGTACATCAGAAAATCCACTTTGGTGAGAAGCCCTATGCCTGTAAGGACTGTGGTAAGTCCTTCAGAATATGCCAACAGCTGACCGTCCACCAGAGTATTCACACTGGGGAGAAACCCTATGAATGTAAGGAATGTGGGAAGACCTTCAGATTGAGGCAGCAGCTTGTTCGCCATCAGAGAATCCATACCCACGAGAGACCCTATGAGTGTCTGGAATGCTGGAAGACCTTCAGTAGCTACTCCCAGCTGATTTCACATCAGAGCATTCATGTTGGGGAGAGACCGTACGAGTGTGAAGAGTGTGGGAAGGCCTTCCGGCTGCTCTCGCAGCTCACTCAGCACCAGAGCATCCATACAGGCGAGAAGCCTTATGAATGCCAGGAGTGTAGAAAACCCTTCCGGCTGTTGTCACAGCTCACTCAGCACCGGAGCATCCACACCGGCGAGAAGCCTTATGAATGCAAGGACTGTGGCAAGGCTTTTAGACTTTATTCATTTCTTTCTCAGCACCAGAGGATCCACACTGGTGAGAAGCCCTACAAATGTAAGGAGTGTAAGAAGGCCTTCAGACAGCACTCACACCTGACCCAGCACCAGAAGATCCACAGTGGAACCTGACAAGCTCTACACCAAGTTGTAACATGTCAGGAAGTCCGTTTTTAAGAATAATTTATTTTGTGCTTGTAAGTCAGCATAAATAAGACTGTGTTGCTTTAAAAGCCCACCATCCCCACTTAAATGTTACATTTCTTCAGCAAATTCCCATGAAAGAATTTTGATGAATGTAGGGAAACGTTTAGCCTCATCTGTTATCATCTACATCTCACCACTCTCTTCCAGTGTGACACTGGACAGGACCCTAAGCATTAATGCCTTGTTTTGCTCACTGTCAAAATGGTGACAATAGCACCTACACATATTATTTATCATTATGTAACAAATTAAATAGAAAAACAGTAGATTAAATAATACACTTGTATTATCTAAAAATTTCTATAGATCAAGAGTCCAGGTATGCCTTAGTTGGGTCTTTGAGGTTTCAGCTAAGGCTGGCTCCCATCCGAAAGCTTAGCTAGAGAAGGATCCACATTGGAGGGAACAGGTTAGACACCTGAATTCATTTCCTTAAGAGCTGATCCACTGGGATTCTCAGTTTCTGGATGGCCATTGGCTGGAAGATGAGTGAAGCTCCTAGCCATATTGGCTGTCCAGTGTGGCTGCTGCTCTAATGATACTGCACAAGCCAAGAAAGGTGGCTGCTAGCAGGATGGAGGCCAGCTAGCCAGACTGACGTGATAATCTGTGCCGTCTAATCACAGAAGGAACATCCAGTCATTTTACCACATTCTACTGGTAAAATGGAGTTATCAGACCAGCTTACTCCAGAAGTCTCGTGAAATTGAATGTCACAAGGAGGCTGGTGAGTGAGGCCCAGGGTAGAGCCCACCTGCTGTACTGCACAACAGCACTGACTTAAGGATAAAGTAGTTAACACTTGACCAACTAGCAGTCATGGTAGCATGTATCATACAATAACGTCTGTAATTCTTACTGCCAGTATTGTCAATTCATGTGAAAGGAAGATGATCCCATGGAAGTAATAAATGTAGAAATGCCTCCTTTCACATCTCTGCATTTATAAACCTCAACATAATTTCTCCTGGGTAAGACCTAGGAAATTATAGGAAATGGGAGATTTTTGTCACTTGAGCAAAAACTTCATGTTGAAAGGAGACTGAGTTTCATGAATGTGTGTTATTAAAACTTAACTATTAAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053985:ENSMUST00000207072:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF097235=Zn-ribbon_8=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF097235=Zn-ribbon_8=WD(100=10.1),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types