MmuINT1035501 @ mm10
Intron Retention
Gene
ENSMUSG00000049321 | Zfp2
Description
zinc finger protein 2 [Source:MGI Symbol;Acc:MGI:99167]
Coordinates
chr11:50910750-50912401:-
Coord C1 exon
chr11:50912280-50912401
Coord A exon
chr11:50910877-50912279
Coord C2 exon
chr11:50910750-50910876
Length
1403 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GGAGAATTTTGTATTTTCAGGAG
3' ss Score
3.72
Exon sequences
Seq C1 exon
GAGTCTCTCATGTCTTCCTTGCCGTCCCTCAGCTCCGCCCCTAGAGACTGCACATTTTCTAAGAAGGCCCCCCAGGAAGGAGGAAGGCAATGGCTGTTAGGCCTCTGCCATTGGCAGCTCAG
Seq A exon
GTGAGACATCATTGTCAGACATCTTTTACTCCCACAATGAGAATGGACTTGATTACAGAGGACAGAGATGTGTCAGAGTATTGGGTCCCTTCGCTGTCCCTCACCTGTGTTCCCAGCTGCTACTGGAGTTCTTGAATGGCACTCAAAGGCTAGAGAGGGGACCAAGGTCACAGGAGAGGTGGATGGGTGCTTCTAGAGCATATGGACCATCAGGAGTCAGAAAAGCCTAGGAAAGGGACGGTCAGAGCTATGAGAAGGAGGAAGTGTCCACCCATCTCACGGTCTGGGAAAGGATGCCACAGAGGATTTGCTGTAATGCAGGTACATGTTTCAATATGGAGTCTGTCTTAGCAGTTGTGTCATGTCGCTCCTCCATGGTGGTGATTGAGAGTCTGCCATGTACACAGCATGGTTAAGTCTTACAGCACTGGCTTCTGTTTAGCTATGATGAAGACTGCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAGATGTACATGCCCATGTTTGCAGAAGCCAGAAGAGGTCACAGATATTTTCCTCTATCACTTCATGATATTTCTATGTTTAGACAAGGTCTCTCACTGAACTAGAAGCTCATCATTCAAGCTGTGTTAGCTGACCAGTAACGTGTGAGTCCTTTTATCTGAGTCTTCAGGATCTTAACTCAGCTCTGCTTGTTTGCTTTGCTCCCTCTTAGCTACTGCTCCATCTTCCCCAGTCTTCCTACAATCTCTTAAACATTGCCACAGGGGGACCAAGCTTCTAACACTTGAGCCTTTGGGGTCAAACCCAGGACAAACTTATGTGTACCTTGGTTCCCTATCCTTGGTTCCTGAGATAGTCAGTGTTAATTGTCACCTTAACAGAATCTGGAATCACCTGGGAGATGGGCTTTTGGGATGCCATCTTGATCTGGTTGAAGTAAGAAGATCCTCCCATGGTGGGTGGCACCATTCCCTAGGCAGGACCCTGGGCTGTGCGAGGAGAAAGAGAGCTGAGCAGTAGGCATTCATCCCCTCTCTGCTTCCAAAAATGTGAATGTCATGTGACCAGCTGCTGCCACCTTGTCTTTTGCAGCATGATGGTCTGCACCCCTGAACGGTGAGCCAAAATAAGTCCTTTCTCCTTTAAGTTGTTTTTGTCAGAGTATTTTGTCATAGAAACAGGAAAGGAAACTACCACAGCTCTCAAACCACTCTGTGTTATTTTCTCCTCAGGCTCATAATGGCTGTGGTTTGTTACACATATTTTGCTTTTGTCAGAATGTAGCCTATACCTTCATTCTTCTGGTCCTGCTTGGTCTCTCCTCAAGGAGAATTTTGTATTTTCAG
Seq C2 exon
GAGTTACTGACATACAAAGATGTGTCTGAGGACTTCACTTGGGAGGAGTCAATGCAGCTATATTCTGCACAGAGGAACCTGAATGGCAGAGTGATGCTGGAGAACTGTAGCACCCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049321:ENSMUST00000109128:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATGTCTTCCTTGCCGTCC
R:
GGAGACCAGGGTGCTACAGTT
Band lengths:
239-1642
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types