RnoINT0167838 @ rn6
Intron Retention
Gene
ENSRNOG00000030750 | Zfp2
Description
zinc finger protein 2 [Source:RGD Symbol;Acc:1562610]
Coordinates
chr10:36400303-36402619:-
Coord C1 exon
chr10:36402484-36402619
Coord A exon
chr10:36400472-36402483
Coord C2 exon
chr10:36400303-36400471
Length
2012 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GGAGAATTTTGTATTTTCAGGAA
3' ss Score
4.6
Exon sequences
Seq C1 exon
TTTTGTTGCAGCAGGAGTCTCTCATGGCTTCCCTTCTGTCCCTCAGCTCTGCCTCTAGAGATGGTGAATTCTCTAGGAAGGCCCTACAGGAAGGAGGAAGGCAATGGCTGTTGGAACTCTGCCATTGGGAGCTCAG
Seq A exon
GTGAGACTTCATTGTCAGACATCTTTTACTCCCATAATGGGAAGGGACTTCATTACAGGGGACAGGAATGTGTTGGAGTACTGGATCCCTTCGCTGTCCCTCACCCCGTTCTCAGCTGCCGCTGGCGTTCTTGATGGCACTCAAAGGCTAGAGAAGGAACCAAGGTCACAGGAGAGGTGGATCGGTGCTTCTAGGGCTGACGCACTATCAGGAGTCAGAAAAGCCTAGGAAAGAGGAGGTCAGGGGCCTGAGGAGGAGGGAGTGTCCATCCATCTCAAGGTCTGGGAAAGGAAGCCACAGAGGGTTTTCTGTAGTGCAGGTGCAAGTTTCAATATGGAGTCCATCTTAGCAGTCATGTGTCATGTCATTCCTCCACGGTGGTGATAGAAATCACAGCCGTTTCCTGAGCGTCTGCCATGTACACAGCGTGACTAAGTCTTATAGCACTGGCTTCTGTTTTAGCTATGGTGAAGACTGCATAGTGGGTGGTGTCACAGTGTCAGGAATGCAGGTGAGTGGGTGAGACCATATAGGAAGGGTCGTAGCAACCTCTAACTGGACCCCAGTCCTTAAAGGTCCTACCAGTTCCCTCTCTCTCCTGCCCCGGGACCGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCGCGCGTGTGTACATGCCCATGCTTATGTTTGCAAAGGCCAGACAAGGTCACAGGTATCTTCCTCTGTCACTTCATGATGTTTTTATGTTTAGACATGGTCTCTCACTGAACCAGAAGCTCACCATTCAAGCTATGTTAACTGACCAGTAACATATGGGAGTCCTTTTATGTGAGTCCTCAGGATCTTACTGTAGGACCCCCTCTCGGGAGACCCCACTCCAGTTGCGGGATTGTACTCCCCCAAGAAACACGAGAGACCGGCTCTTGATGTAAAGCACACAAGGCAGTTTATTATCAGAGCTCTGGGACGGCTCGTATCTCACACAGGAGACAGAGGAGTCAACCCCAAGACTCGAAATTTAAGGCTTTTTATAGGGGAAGGAAAGGGGATTCTGCGTGGTTATACTTGATTGGTTGATTTATATATCAGCAAGGGAAATGGGTACAAGGTCTCATCAGCAAGCAGTACGTGTGGGCTGGAGTGTTCACAATGTAGGAGAGCGTCTTATCTTTATTTGTAGAGCAGGGAGTTTGGTAGTGGCTAGCTAGTTCCTGGAACAATCCCTCGACCTTGTTTTTAGGCTTGGCCGGGCACGTCTCAGGCCCATTCTGTCCTGTCCCCTTATCTGCTGTTCTTTTGTAGTTTTTATGAAGTTTTTATTTTAACTCCTTCACTTACCTCAGGTCTGCTTGTTTGCTTTGCTCACTCTAGCTACTGCTCCACCTCACCAGTCTTCTTAAACATTGCCACAGGGGGATGTTCAAGCTTCTAACACTTGAGCCTTTGAGTCAAACCACCTCAGGACAAACCATAGCACTTCTGTGTACTTTCTTTTCCTATCCTTGATTCTCGAGACAGTCAGTGTGAATTGCCACCTTCACAGAGTCTGGAATCACTTGGGAGATGGGCTTTAGGCATGCCATCTTGATTAGGTTGAAGTGAGAAGACCCTCCCATGGTGGGCGGCACCATTCCCTAGCCAGGACCCTGGGCTGTGCATGGAGAAAGGGAACTGAGCAGCGGCCATTCATCCTTCTCAGCTTCCCAACTGTCATGTGACCAGCTGCTTCTTGCTCCTGCCACCTTGTCTTTTGCAGCATGATGGTCTGCACCCCTGAACTGTGAGCCAAAATAAATTCTTTCTCTTTTAAGTTGCTTTTGAAACAGGAAAAGAAATTACCACGGCTCTCAAACCACTCTGTGTTATCGTTTTTACCTCTGGCTCATAATGTCTGTGGTTTGTTGCACATGTCTTGTTTTTGTCAGAATGTAGCCTATACACTCATCCTTCTGGTCCTGCTTGGTCTTTTCTCAAGGAGAATTTTGTATTTTCAG
Seq C2 exon
GAATCACTGATATACAAAGATGTGTCTGTGGACTTCACTTGGGAGGAGTGATGCAGCTATGTTCTGCACAGAGGAACCTGTATGGCAGGGTGATGCGGGAGAACTGGAGCACCCTGGTCTCCCTGGGTGAGCAACCCCACCTTCAGCCTTCTGCCTATGGAATTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030750:ENSRNOT00000040346:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]