MmuINT1035533 @ mm10
Intron Retention
Gene
ENSMUSG00000036916 | Zfp280c
Description
zinc finger protein 280C [Source:MGI Symbol;Acc:MGI:2387585]
Coordinates
chrX:48588703-48592133:-
Coord C1 exon
chrX:48591673-48592133
Coord A exon
chrX:48588750-48591672
Coord C2 exon
chrX:48588703-48588749
Length
2923 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
3' ss Seq
TGCCTTGTACTTGTTTTTAGTTG
3' ss Score
7.87
Exon sequences
Seq C1 exon
CAGTTTTTAAAGATGTTATATTGTTTGTACATTTTAGCATTTGAATAATACTATATCCAAGTACGTTTAAAAGCTGAAGAAGAGCATTGGAAAAAGTACTGATAATGAAGAACTGCCAACCTCAGCTTTTCCTATTTAATCCCTTTGCTCCAGTTTCCTAAAATTCCCAATATAGGCTGGCCTTTTCAGCCCAGCGTTTCGCCACTTAACATTACCTTTTTATGAAGGGAAGGGATTCTACGCCTTCCTATTCTTCCACTTATTTTATTTTTCTAGGAGAACACTTAGAACCATACAGAATTTTTGGAAGTACTAGGGATCAATTTGTATATATTAATTATAGCTGAATAATTTTTTTCTTTCTGTTTTCAGGGAGGACTTTGTCTTTCTGGAGCCAGGAAGGTGATGTAATTGCTACCACCAAACCTGAGAACTTGAGCTCAATCGCAAGGACCCATATG
Seq A exon
GTAGGAGAGAAACAACCCCTTTAGGTTGTCTTCTGACTTTCACACACACACACACACACACACACACACACACACACACACACACACATTTTGAACGATAATTGGTTTTTAGATTAAATTAACTAGTACTTTAGGAAGCCTTGACAAACCCAGTAACTTGAATAAAAATGTACCTCTAGGCTTTTAAAATTTATTCTCTACAAATTGCTTTTACTTTAATAATTGACATAAAGATAAAAGGGTTACAGCAACAGCTATTTGATAACAATTTAGACATGATACTCCTTTTTTATACCATCAAGGCACGATGGTGCATACCTGTGATCTCAGCAGTTGGGAGGCAGAAGCAGGAGGATCACAGCACGTTTAAAGCCAGACCAGTGTACAATTAAACCTTCAAGCTAACCAGGGTAACAAAACCCTGACTCAGAGAGAGAAAGAGGAACAGTATGAAGTGGGAGGAGAGAGAGGAAGAGAAAAGTGGGGAATGAAAATATAAACAAATGCATTTAATTCTTTTTCTATTGTCTATGCATGTGTGTATGTACACACACACGCACCTGCATGCACAAGTATGCCAAAGCATTCATGTAATGGTTAAAGGACAACTTACATAGTTGGTTTTCTCCTTCCATTATGTAAACTCCAAGGATTGAACTCAGATAATCAGGCTTGGTGGCAAGTGTCTTTACTCACTGAGCCATCTGCCTTACCTAACTAAGGCATTTTAGGAGCTGAGATGTCTGCTTTTTCCTCTCAATCCTAAGTATAAATCCCAGGCTGTTGTGCGTGCTAAGTAAATGCTCTGTTGTTGAGCTACATACCAGCTCTTGATTTTCCAAGCCCAAGTTTTACTATGTAGCTCAGGCCAACCCTGAACCTTCCTGTATAGCTTAGCCTAGCCTGTAATTTATGATTTTTGTGCATCACCCTCTCATTGTAAACTATATGGTGTGTGTATGAGGACTCAAGATACAATTTAAACTGAAATTCTTTTTAATGAAGAATGAAACTGAAATTTAAGAATTTAAACTGAAATTCTTTTTAATGAAGAATGAAAAATTGAATTCTATTCAATTTTTTTTGGTTTTTGGTTTTGTTTTTTGTTTTTTTTGTTTTTGAGACAGCGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCTTCAAACTAAGAAATCCGCCTGCCTCTGCCTTCTGAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCTGGCTCAATTTTTGATTAATGTAACACTTGTTTTTAAAGGTCCAAATAGGGCTGGAATATGATGCTTATGGAAAGACACTAGCTTAGCACATATTAAATTTGATCATAAGCACCATAAAAATAAAATCTTAAATGTCTATAAACAGTCTTCATTTAGGGGGTGGGGATAAAGCTGTAAGCAACCATGGCTGGATTTTTTGTAGTTTTTCTTTAAAAAAAAAGATTTATTTATGTTATGTATATGAGGGCCCTATCTGCATGTATGCCTGCATGCCAGAAGAGGGCATCAAATCCCCTTATAGATGGTTGTGAGTCACCATGTGGTTGGTGGGAACTAAACTCAGGAATTGTGGAGGAGCAGCCAGTGCTCTTAAGCGCTGAACCATCTCTCTAGCCCCCAGTGCTGCATATTTTATTTTGATTTTTTTTATTATGCATTGTATTTGTGTGTGCGCAGGTGCACCTGTAAATGTTTATATGTGGGTGCATGTGAAAGCCACAGGACAACCTCAGGTCTCATCCTCAGAAATTTCATCCACCTTCTTGAAACAAGGTTTCCTTATTGGCCTGGAGGTCACCAACGACAACAGACTGGTTGGACAGCAAGCCCCAGGAGCCCTGTTTCTGCCCCCTCAACTCTGGAATTCCAAGTGCATGTTTCTATGCTATTGATTCTGGTGATCAGACTCAGGTCCCATAATTGAAGTACAAGAACTGTATCTTGTTTTATTTAATTCACACACACACACACACACACACACACACACTGATCACTCAAAAGATCTCCACACAACAGCCGGGCGTGGTGGAACATGTCTGTAATCCCAGCACTTGAGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGACCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACTAACAAACAAACCAAAAAAGATCTCCACACAACACCAGAAAAAAAAAAGAAAAGAAAACCAACCCTGAGCGTAATAGAGGCAAAAATCATAACATAAAAATATAAGAAATATGAAAACTAACATAAATTAATATAAGACTTCAACATTTGAGTTCAAAGATATAAAATGGTTGTGTGTGTGTGTGTTTGTGTGTCTGTGTCTGTGTATGCGTACATGTACATGCATACATGTGTGTGCATGCCAGAGCATGCTTGCAGACATCAGAGGACAACTTGCAGAAGTTGGTTCTTTCTTTTGTTTGTTTGTTTGGTTTTTTTTGTTTTGTTTTTTGTTTTTTGTTTTTGAGACAGGGTTTCTCTGTATAGTCCTGGCTGTCCTGGAACACACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGTCTTTGCCTCCCGAGTGCTGGGATTACAAGAGTGCGCCACCATGCCTGGCTCACGTTGGTTCTTTCTTAAACTGAGGTTTTCAGACTTGGCAGCACGTGCCTGTAACAGTGAGAACTCCTTACAGCCTGGTACCTTTATTTTATAAGGTGGAAAACAAAGTTCTAACCTCTTACCTTGTCAGGAATCATATGATAAGTTTGCTTAAGATGGAAATTAGACTCAAAGATTTCTGACTCAAGTTTCATGTTTCAGTATTTAGTATTATTTGGAACTCATAAAATTGATTGGTGCCTTGTACTTGTTTTTAG
Seq C2 exon
TTGGTTCTTCAATTTGATGGATAAAGATAACTCTGTTCAAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036916:ENSMUST00000076635:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.558
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types