MmuINT1035543 @ mm10
Intron Retention
Gene
ENSMUSG00000031079 | Zfp300
Description
zinc finger protein 300 [Source:MGI Symbol;Acc:MGI:3045326]
Coordinates
chrX:21084216-21088580:-
Coord C1 exon
chrX:21088522-21088580
Coord A exon
chrX:21084356-21088521
Coord C2 exon
chrX:21084216-21084355
Length
4166 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CCAAACTAATTGAATAAAAGTAT
3' ss Score
-3.01
Exon sequences
Seq C1 exon
TTCTGCCTTTTTAGGCCTTTGGCTTCTCTCCACAACAGTCAGTCATGACTGAGTCCCAG
Seq A exon
GTAAGTTCTTATTTGCTTCTCCCAGTTATCCTCTGCCCATATTAGGATAGAAGCAATATGGTCTAGTGGTTAAGACTATAGAATCTGCAGCTAAATTGCTCTTAACAGCATTATGAGCTTACCAAAGCTCTCTGTGCCTTAATTTTCTTAACTGTAAAATGGGAATGGTTAAGATAATAACGATAATATCTACCTTGTATGGTGATTGTGAAGGTCAATTGAATTAATATATGTTTAGAACAATGCTTTGATACATATATAATAAACTTTATATGTGAGTATATGAATTATTGCATTATTATTTATTCTATAAGGCCGATACATATAAACACAAACTTTAAGGATATAGAACAAGACCAGCACAAGAGTGTGAGTGTGTCATAGGATTTTATATTTTATGTTAAAATACAGTTAATTTTCTGAGCTTTCTGTAAGCCATAACATAAGAGGAATGAAACATATTCACTTGTATCTCATTATTAAAGAAACAGTAAGCCACTTCCACGGGTGCACAAACTTCCTAGTGTTGGTCAGACAGTCCTCTGATGGGTCCTTCAAGTCCTTATTAGAAAACACAAGGCTAATATTGCTCTGTTGTAACTTAAATTATTTTCCTGTCAACCAAAGGTGTCTTGCTAAAACAAAACTAAAAAGGATGTGACTGTTCAGGAAAGCCAAGCCAAGCCTACAACAAATATGTCCTGGACTACATGTGAATAAAAACTTGATGACCAAGAAGACTATATAAGCCATATGTCCTTCATATTCTTTTCCAGAATGTTTTTCATTTTTATGATCTAGAAGGAAACCTTGAGAAATTCAGAGGGTTGTCCATTTACTTTTAGCCTCAAAATTCATAACATCTCTGAATATTTTACATTTTTTTCTTTTCTGCTCTTCTTTAACAAGTCTACTATTTCATCTTCTTTTTTCTTCATACAAAAGCAGCATAGGACCAAAAATTCAAACTTCTTTAATAAGTGTAGTCACACATGCTTATTATCCCAATTTTCAGGAGGTCCAGAATTCGAGGGTAGCCTTGGTTACCTAGTGAGTTCCAGCCTAGCCTATGTAGCAGACTGTGTATCCAAAAAAATCAAGGGTTAATTCAACACCCCCCCCCAGAGAAAGAGAGGGAGGGGGGAAACAGATGAGGAGGCAGTGGAGATTGATAGGTAGAGCACACTGAGGGTGTAGCACAGTGGTAGTTTTTCTAGCATATAGTGGGCCTTGGATTCAATCCTAAATGCAGAAAACAAACTCTCCAGGAATTTACAGTCTAGAAAAGCACTTATATGTAGTTCGTTTGGCTAGAATGCTCAAGATACCCTTTGTTCTTCTTCCAGGAAAGCAATAATAATAAATAAAATAAAAATAAAAGGCAGAATATCTCATTATATCATCAATCATTGCAGATCATTTGAATTTGGTTATCTTTTGCTACTCTGCCTTGATCTTTCTGTATGTACATATGTTTCTAAACATAATAGTTAACATGCATTCCTTTTGTTAAAATTTACTCATTAAATAAAACTTTTGCAACTCTGTCTTCTCTTTACAATGTAATAATGGTCACAGCAATATAAAGTGATCATCCATAATCTGAACATCTAAATTTCCCAAAGTTACAAATATGAAACATAAAAATTCCACAAATGATCTTATGTGATGATGAATCATAGCCAAAATGCAGGCATTCTGAAAGTATTTTGTAAAATTTCCTTAAACAGCATATATATATATTTCATGTGTACATTTGGATCTCATCACTAAAAATATATTATTATGTGAATATTCAAAAAATCCCAAATCTAAAATGCTTCTTTGTCTCATGAATTTTGGATAAAGACTGCACAATCTGTAGTAGTAATGATGGTGGTGCTAATGGTAATAAGACTGGCAGCAAGTGACCTCATACTATGCATAGCACTCTACTGAAGAAATACTTTATGTGCATTGCCAACTTTAATCTTCATAATAACACTATTAAATAGACACCATGATCAATCATGTATTCTAGGTGAGGGACAGAGTAAATAAGATTTACACAGCTGATCACTAGCACAGCTGGAATAGCCCCTACTAAATGAATACTTGTTTACAGATGTTTCAATATCAGGACACACAGGGGTTTTGTTCTTTGTGCTTTTTAAATCAATGCAGAGGATGAAATCCAGGACCTCCTATATGCTAATGAGCATTCTATTACTAAGTGACACACCTTGCTAATAGATATTTTATTTTGTTTTCTTTAATTTGATTATTTTAGTTTTGCTGTAGGGTTTCACACATATAACCCAGGCTAGTCCTGAACTAGGTATTTTCCTGCCTCAGCCTCCTGAGTGCTGAGATTATAGACATATGTTACCAAAGCTAGCTCACATAGGAATATTTTGAACAGCTGTGTTTTTCTCTTGTATTCATGCATCATGATTTATTGATGTACTTCATGTTGAAGGAACTTTGTGTAATTTCTGATAGTGGCATAGTGATGGTTTGTCATCTTTGTTTTCAGAGATAAGTATTTCTAAAATGTCTATTTGAAGAGGTGGGTGTGCTGTGAATGTGCATAGATATTGCCAACCTGCATTTTGAAATGTTAATTCAAGTTGACAGTTTCTCTGATAGTCAATGAAAAGACCTTTGTCAATCCGCTTGTCATAGTTTAAAAGATTTGCAATATGATAATTGGAAATATCTTATATTTAGGTTTGTGTTTATCAACATGGTTGAACAATATTTCTTTTGTGACTTGTTTTTTTCCCCCAAATACTCCTTTTTTTAAGTGGGTTTCAAATCATTGTCTTCCTATTTTTGAACATTTTGTGGAAATATGACTTAGACAAAAATCTTATGATGTACATTTGTTGAAATATAGCAAATACAAAAGCATATAAAGTACACAGTTTTCATGAACTTCTAAAGATTAAAAACCACTTAAATAAGCGGTACTTGGATCAAATAAGAGGAGGAAATAACATGGTTCCTAGAAGCTTCCAGGCCATTTCCAATTATTAGCTCTTGATTTATATTAACAGCTTTCTAATTTCTATCATCATAAATTATTTTTGTCTTCTTGAATATCACATAAATGGAAATATACATATTATATTTTTGGACCTGACTTCTTTTACGTGTCATGAATTTTTTTGTGATGCTGGGACTAGAACCCAGAGCCTTACAAATGTTATGTAAGCACTCTTCCACTAAGCTTTATCTCTCACCCATCATGTTTTAAATATACATGTTACTTTAGGTATCAGTTGTTTGTTCTATTTCTGCTATTTTGTTATTTTGCATAAGAATTTCACAATTACTCTTCAGATCCACTGCTGATAGATGTTTGCATTTTTGCTATTATAAATAACATTTCTGTGAACATTCTTGTTTATGTATTTGTGAACCTGTGTGCATATTTCCTTTAGATACATATCAAAGAGTAAGGTTGAAACTTCATAGAAGTATTTTCAGCTTTAACCATTCTACCAAGCCATTTTCCATAATGTCTGTACCATTTTACTCCAGGCGGGGTATGAAAATTCGTGTTGTTCCACATCACTGATAACATTTAGATTGTTTGACCTAATTTTAACTGTTCTGTTAGAAAATACTAGTATCTCAGTGAGGCTTATGTTTGTGTTTCTCTGATGACTAATGTAACAACAAGCATCTTTTTGTGTGTTTATCCACTATTTGGATATCCTCTTTTGTGAAACATCTATGGAATATTTTTATTTTTACTATTGGATTATCAATATTTATCTCATTAGATCTTAATAGTTTCTATAGTGTGAAGGTCCTTTGCTTTGATTAGATCTTGCAGTGCTGAGAATACAGTTCAGGGCCTATACATGCTGGTTAAGTATTCTACCACTGAGCTACACCCCTAGTCCCGAAGAAGGAGTTTTTAATTGTAAAACAATACCTTCTATTTGAAGTATATTTCTTTATCATAAAGAACATTATCTCTTCAGTTAGCCTGATCTGAACTAACTCTCTCTCTCTCTCTCTCTCTTGCTCTTCCCCCTCTTACAAACACATACACACACATCATATATACTCCATAAATATGTGCAAATAAAATGTAGCAATTTTAAAGTATTAAAACAAAGATTTACTAACATTTGGAGATGACTTTAATTTTTACCAAACTAATTGAATAAAAG
Seq C2 exon
TATGCAATTACAGGAATCAGTGTCATTTGAGGATGTGTCTGTGGACTTCACTCAGGAAGAATGGAATCAACTGGACCCTATTCAGAGGAGCCTATACAGAGATGTGATGCTAGAGAACTATAGTCATCTTGTCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031079:ENSMUST00000040667:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=87.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types