HsaINT0187984 @ hg38
Intron Retention
Gene
ENSG00000187801 | ZFP69B
Description
ZFP69 zinc finger protein B [Source:HGNC Symbol;Acc:HGNC:28053]
Coordinates
chr1:40454203-40457071:+
Coord C1 exon
chr1:40454203-40454288
Coord A exon
chr1:40454289-40456944
Coord C2 exon
chr1:40456945-40457071
Length
2656 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GAACGTATTTGATGTTCTAGGAA
3' ss Score
7.34
Exon sequences
Seq C1 exon
CTCTGCTGTCTCAGGATGCTGATGAGACCCAGGGCGAAAGTTTAGAGAGTAGAGTGACCCTTGGATCCCTGACAGCAGAATCCCAG
Seq A exon
GTGGGTTGGAGTTTCTGGTCACTTTCTTGACATTGTTTCTCAGATTTTAAGAGCGCAGGAGTTTGATTTTCTTTGACTCAACTTCCTGGATTGGCTTTTCTTTTTTTTTCTTTTTTTCATTATTTTTTGAGACGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTAGCGCAATCTCGGCTCACTGCAAGCTCCGTCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCACCACCACACCTGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGGCAGATGGTCTCAATCTCCTGACCTGGTGATCCACCCACCTCGGCCTCCCAAAATGCTGGGATTACAGGCATGAGCCACCACGCCCAGCCGATTGGCTTTTCTTAGCCTGTTCTTCCTCAGAAAACCAGGCCACATCAGTTGATTTCACAGGTAATCTCCCCACCAGTAGTAACCCTCCACAGGAAACCTCTTGTTTTTGCAAACCTCTAGCCATTTATCCAACAAATACATTGTGCTGAGGCCGCATGTGTGTGTGAGAGAGAAAAGGAAATAGAGAGGAGAAGAAGTAATGTAATGTAGTCCTAGCCCATGAAATTCACATATCATCTGGGAGAAAGACAAATATGAGTCATTTTAAGCAACATTTAAAAGTCAACAGAATCAGTTTCTGATATTCTTGGAGATGTATACACTTCATTGATGACCTTTAAGTGAGGATTTTTGGTCAAGTCCTAGAGCAGAACTGTAACTGAAAAGAGAAATGAGTAGAGAAGATACTGGCAGGTCATGAAGAACATGAGCTAAATAGGCTAAGCAGAAAAGGAAGGAAAACTTCTAATAGCAGTTTAACAGTGTGCCGTGTGTCCTAAATGAAGTAGTCAGAAAACTGATAGCATTGGCAAAGCTCTGCACTACCAAACCCCAGAGGCATAGGGAAACTCAAGAAAATTAGAGAGTAGTCAGAGAAACATAAGAGGGTATTATTAGAGAACAGAAGAGTTTAGAGTGATCTTGGCTCCCAAAATCACATGGTTTAATCATGTGTTTAAATCATAGGGTTTAATCCTATGTCTTCAACTTTTCTCAAATTCAGCTTTCTCATAGGTTAAATGTGGATGCTAACATCAGCCTAATAGGCCTGAAGGGCATTTCAGAATTATTTACAATACGAAACATTAAAATATTCTCTATACTTAGGGGATTTGTTGTTATTTCAGCCTTCCAGCTTCTGAATTCTCTTAGCTTTTGGGAGGTTTTTGTTTGTTTGTTTTTTGTTTGTTTGTTTGTTTTTAATTATACTTGAAGTTCTGGGATACATGTGCAGAATGTGCGGGTTTGTTACATAGGTATACATGTGCCATGGTGGTTTGCTGCACCCATCAACCCGTCATCTACATTAGATATTTCTCCTAATGCTATCCCTCCCCTAGCCCCCATCCCCTGACAGGCCCTGGTGTGTGATGTTCCCCTCCCTGTGTCCGTGTGATCTCACTGTACAACTCCCACTTATGAGTGAGAACATCCGGTGTTTTGTTTTCTGTTCCTGTGTTAGTTTGCTGAGAATGATGGTTTCCAGCTTCATCCATGTCCCTGCAAAGGACATGAACTCATCCCTTTTTATGGCTGCATAGTATTCCATGGTGTATATATGCCACATTTTCTTTATCCAGTCTATCATTGATGGGCATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAACAGTGCTGCAGTAAACATACGTGTGCCTGTGTCTTTATAATAGAATGATTTATAATCCTTTGGGTATATACCCAGTAGTGGGATTGCTGGGTCAAATGGTATTGCTGGTTCTAGATCCATGAGGAATCGCCAGACTCTCTTCCACAATGGTTGAACTAATTTACACTCCCACCAACAGTGTAACAGCATTCCTGTTTCTCCACAGTCTCCCCAGCATCTGTTGTTCCCTGACTTTTTAATGATCACCATTCTAAATGGCATGAGATCGTATCTCATCGTGGTTTTGATTTGCATTTCTCTAATGGAGTATTTTTAAAAAATAATTGTCAAACGGTTATTTTTTGTAGATCATACATAATAGACACTTATACTTCTTACCCCAGAATGTCTATCTCTGTCCAGACGTCTTCATTACTAGGCAGAATTCATGCTCCCTCCAAAAATGTGCTGTTCTCTCATACTTTTATTATTAACAGAAAAACCTAGGTAAACGTTATTTTACCCATGCTAAAGTATTCCTATTTTAACCAATTCTTTCAGCCCAACAAAAGTCCCTGTCTTCTCTTGTGGCCTTAGCCCCTTCTGAACTCCCCACTTTCCCAAATACTCCTGAACTTTATTGTCTTTAATCAAAATTACTGTACACTGTACTGTGACCTTCTTTAATATTTCATGAACATTTTCACTTCAGCCAGATTGTAAGTTGCAGAGGTAACTTACATGTTTTATGCATTGTTTTATAACCTCCATTTTATGTAATCTATAATCATTAGAATAAATTAAATGATTAGCAAGACAGTATCCAGGAAAACTTGACTAGAATCTCTTAGCATCTAGACAAAAGTCAGAACAACTTCCCAAAGTCTGGCTGAAAAGGAACGTATTTGATGTTCTAG
Seq C2 exon
GAACTGTTAACCTTCAAGGACGTATCTGTGGACTTCACTCAGGAGGAGTGGGGGCAGCTGGCCCCTGCTCACCGGAATCTGTACCGGGAGGTGATGCTGGAGAACTATGGGAACCTGGTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187801:ENST00000411995:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=NA C2=0.147
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(6.5=10.3)
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains