MmuINT1035607 @ mm10
Intron Retention
Gene
ENSMUSG00000033961 | Zfp446
Description
zinc finger protein 446 [Source:MGI Symbol;Acc:MGI:2442185]
Coordinates
chr7:12979885-12981927:+
Coord C1 exon
chr7:12979885-12979979
Coord A exon
chr7:12979980-12981845
Coord C2 exon
chr7:12981846-12981927
Length
1866 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
GACTGCTTGCATCCTTGCAGGAG
3' ss Score
8.32
Exon sequences
Seq C1 exon
TATCTCCAAGTGCCCTCCTTTCAACCCAGGATTCCGAGGGACATCTTGAACATCAGGAAACGGTCTCCATATCCTTCCAAACAGGAAGGATCCAG
Seq A exon
GTAAACAGCCTCTCGCAGGAACTGCAGGCCATGTGTGGGGGAGGGGATTACCCCTGGTGGCTGTGTTCTGCCCTGTAGTTTTGTAGGATCCCCTGCCAGTGACTCATGCGCTTTTTACTGCTTCTGAGTAGTAAATACCTTCCCTCCCACCAAGTCCTAAGAGCTGAAGAATAGACCGGTAGAATCGAACTAGAAAGGATTTAGGCCCCAGGTCCAGGGTGTCTAGAACTGGCGGGCATGGCTTCCTCACTTCCAGAGAAGTCAGTTACTGGAAAGGTTTGTGGTATGAGCCAGCTGTTATGTGTACGGTTGGAGAGGTGTCCTGCAGTCCTGAGGTCAGATCAAGATACTCTTCCCGAACATTCCTCGAATCCCTTCTACTGCTCTTCTCAGTGTACAGTGGCATGGAACCTGAGCTTACCCCACTACCCGAGTGTATATAGTTAACGTGGAGGGGGTAGGGATCTGTGCTCTCCAGGTTCCTTCTGCTTCCGAGCCCCTCCCTTCCCCAGTAGGATGCCTAGTTAGGGTGTGCTTCAAGGTTAAGAATCCCTTCTCTGACCCCTCTCTGGTGTCTTCCTCCATTCCAGACAGTAGTACCAACTCTCGATGTAACTATGGCTGCCACCTCCCTTTCTCCAGATTTGCTTTGGCTTGTCCTTCGAGGTTTTTTTCTCAACCTATCAAAGACCTATATGGCAGATTTCAGGGCAAGGAATTTTTTTCCTTGGTAAGGCCACCATAGGACCCTGTCTTGCCACCAAACTACCTCTCTTCAGACCTTTCCAGCTGGTACCAAGCACCTAAGCTTTTTTTCTCCATCACTTTTGCGTACTCACCTCGTCACAGTCCTAAAATTCCTCCTCCTCTTCCTCCTCCTTTTTTCTTTTTTCTTTTTCTTTTTTGGTGTGTGTATGGGAGGGCAGTTCAAGACAAGGTTTCTTTGAATAACAAGCCCCAGCTGTCCCGGACTGGCTTTGTAGACCAAGGAACTCCTGAGTGCTGGGATTAAAGGTATGTTCTACCATGCCCAGCTTCATTATTCTTTTTTCATCTTAGTCTTCCAACCCACCGCACCTTGTTTTTGTTTTTGTTTTTGTTTTGTTTTATCTCTCTACTCAGCCCCAAATGTCCTGGATCCCAGTATGTAGACCAGGCTGGCCTCTGCCTCTGAGTACTGGGATCAAAGTGTGCACCTACCATACCTGGCTCCTTAGTCCTCTTTCTAAAAAAATAAAATAAAATGAAATAAATAAAGGTTTTGCAAATGTAGCTCATTTGGTAGAGTGCCTGCCTAGCATGCATTAGGCCCTAGGTTCTATCTCCAGCACTGCATAAACCGGTAATCCCAAAACTCAGGAGGCAGAGACTGGAAAATCAGAACTTTCAAGTTATCCTCAGCTACGTAGTGCATTTGAGGCCAACCTGGGCTACATAGACCTACTCTTTCTCACAGGCACCCCAATAAAGGCCAAAAAAAAAAATCTCTCACCCCAAGGAAGAATTTTCAGTTTTGTTAATCAGTCTTGACAGAAGGTAGCTGAAGCTCAGGTAGTCTCCAGACCTCTTGTTGACTTTCCATCACATCCTGTTCATAGTGTAGTGACTAGAAGGATAGACAGCCACTGTGGCTTTCTCCAAAACCTACCCACAAGTTCAGTCCTCTGGCCATCAGTGAGATAGACCACTGAGAAGACAGGGATGGTAGGTTGGACAGATGAAAGCTGACCCAGAACTCACAAATGCCAATACTGGCTTGGTCCTTAGCCTGCTACAGATGGAGATCCAGTAACCTGCCAGCCACGGGGTGGTGGGTAGGGGTATGAGGCTGCCTGGGAGAGGCAGTGACTGCTTGCATCCTTGCAG
Seq C2 exon
GAGTGGGGCCTGTTGGACTCATCACAAAAAGAGCTGTGCTGGGGTGTGATGCCGGAGAAGTACGACACAGTGGTGTCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033961:ENSMUST00000045810:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.684 A=NA C2=0.135
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(23.7=28.1)
A:
NA
C2:
PF0135222=KRAB=PD(69.2=58.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types