MmuINT1035719 @ mm10
Intron Retention
Gene
ENSMUSG00000021510 | Zfp729a
Description
zinc finger protein 729a [Source:MGI Symbol;Acc:MGI:3036250]
Coordinates
chr13:67623468-67624161:-
Coord C1 exon
chr13:67624035-67624161
Coord A exon
chr13:67623564-67624034
Coord C2 exon
chr13:67623468-67623563
Length
471 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TTTCTTTTTCCCACAAACAGGTC
3' ss Score
10.82
Exon sequences
Seq C1 exon
GAAATGCTGTCATTCAGGGATGTGGCCATTGATTTCTCTGCAGAGGAGTGGGAATGCCTGGAGCCTGCTCAGTGGAATCTGTACAGGGACGTGATGCTCGAGAACTACAGCAACCTTGTGTTCCTGG
Seq A exon
GTAAGGAGAGCTTCCATTAATTGTCAGCATGAAACTTCCTCCTTTTGTACAGTATCTGATGGGAGCCTGTGCTTCCAACAATATCGTTTATAGGACTACTTTTAAGAAAATTTGGAATAATTTATATACCTTACAACTATTTCTTCTGGTGTTGGTTCCTCCCTGCACCCCCATAAAAGTCTAACTGTTATTAGAACGTAAGTGGTACACCTTACAGAGACTGTCAAACACTTCAGTTTTAAAAGTTGTCCTTATAAATAAGGACATGAAATAAGGGACATGAAGCTCAGGACACAGAAGTCTTAAGTTTCTCCTAAGGACTCTGGTGTGCCCATCAGAAAACATGTGAAGAATGAATCCTCTATACTTCTCTATTGTATCTTCTCATTGATTATATACACAGTCTGGAAAGGACCATTTTATTTTCCAGGAGAATACCCTAACAATGTTGTTTCTTTTTCCCACAAACAG
Seq C2 exon
GTCTTGCTTCGTGTAAGCCACATCTGATCACATGTCTGGAGCAAATACAAGAGCCTTCAGATGTGAAAAGAGGAGCAGCTACCTCTATGCTCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021510:ENSMUST00000012314:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGCTGTCATTCAGGGATGTG
R:
CCCGGAGCATAGAGGTAGCTG
Band lengths:
222-693
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types