Special

HsaINT0188262 @ hg19

Intron Retention

Gene
ENSG00000172687 | ZNF738
Description
zinc finger protein 738 [Source:HGNC Symbol;Acc:32469]
Coordinates
chr19:21558040-21558766:+
Coord C1 exon
chr19:21558040-21558166
Coord A exon
chr19:21558167-21558670
Coord C2 exon
chr19:21558671-21558766
Length
504 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
ATTTATTTTTAATAAATCAGGTA
3' ss Score
4.9
Exon sequences
Seq C1 exon
GGGCCGTTGACATTTAGGGATGTGGTCATAGAATTCTCTCAGGAGGAGTGGCAATGCCTGGACACTGCTCAGCAAGATTTGTATAGGAAAGTGATGTTAGAGAACTTCAGAAACCTGGTGTTCTTGG
Seq A exon
GTGAGAATAACTTTAATACACAATTCCTTATATACACTAAAGGTTTCATTTCTCCATTTTTGTAGAATAATTTTTGGTAGTTTATGCTTTGCATAAATGCGTTTCTGATCCCTGTTTTCAAAAAATTGCGAGGAATTATCCATGCAGAAAAAAATTTCCTCAAGATGTTTTATCTTAGCCTGAACTTTTTGCATTCCTGAGCTGGTCTGTACCCTTCACTCTAGAGTAGTGGTAATCTCAGAAATTTAGTAGTATAAAATATTGTTGCCCATAGGTTAAAATCTATTTGCCACCACTAATTTTTGATTCATGAGCACTGAGTAGCAAAATTAAGGACCTACAAATTTAAAATATTTTCTAAATGTAAGAACTTTCTGTCATTAAATAGTATTTTGGGATGAATTTTCTAGAATATTCTATTACCTCCTCTTTACTAAGCACAGTAATAGGTAGGTAATTAGAGAATATGAGCAAGATTCATGTTATTTATTTTTAATAAATCAG
Seq C2 exon
GTATTGATGTCTCTAAGCCAGATCTGATCACCTGTCTGGAGCAAGGAAAAGATCCCTGGAATATGAAGAGACACAGTATGGTAGCCACACCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172687-ZNF738:NR_027130:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.091
Domain overlap (PFAM):

C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
HIGH PSI
([1])
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCGTTGACATTTAGGGAT
R:
CTGGGGGTGTGGCTACCATA
Band lengths:
223-727
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains