HsaINT0188262 @ hg38
Intron Retention
Gene
ENSG00000172687 | ZNF738
Description
zinc finger protein 738 [Source:HGNC Symbol;Acc:HGNC:32469]
Coordinates
chr19:21375238-21375964:+
Coord C1 exon
chr19:21375238-21375364
Coord A exon
chr19:21375365-21375868
Coord C2 exon
chr19:21375869-21375964
Length
504 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
ATTTATTTTTAATAAATCAGGTA
3' ss Score
4.9
Exon sequences
Seq C1 exon
GGGCCGTTGACATTTAGGGATGTGGTCATAGAATTCTCTCAGGAGGAGTGGCAATGCCTGGACACTGCTCAGCAAGATTTGTATAGGAAAGTGATGTTAGAGAACTTCAGAAACCTGGTGTTCTTGG
Seq A exon
GTGAGAATAACTTTAATACACAATTCCTTATATACACTAAAGGTTTCATTTCTCCATTTTTGTAGAATAATTTTTGGTAGTTTATGCTTTGCATAAATGCGTTTCTGATCCCTGTTTTCAAAAAATTGCGAGGAATTATCCATGCAGAAAAAAATTTCCTCAAGATGTTTTATCTTAGCCTGAACTTTTTGCATTCCTGAGCTGGTCTGTACCCTTCACTCTAGAGTAGTGGTAATCTCAGAAATTTAGTAGTATAAAATATTGTTGCCCATAGGTTAAAATCTATTTGCCACCACTAATTTTTGATTCATGAGCACTGAGTAGCAAAATTAAGGACCTACAAATTTAAAATATTTTCTAAATGTAAGAACTTTCTGTCATTAAATAGTATTTTGGGATGAATTTTCTAGAATATTCTATTACCTCCTCTTTACTAAGCACAGTAATAGGTAGGTAATTAGAGAATATGAGCAAGATTCATGTTATTTATTTTTAATAAATCAG
Seq C2 exon
GTATTGATGTCTCTAAGCCAGATCTGATCACCTGTCTGGAGCAAGGAAAAGATCCCTGGAATATGAAGAGACACAGTATGGTAGCCACACCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172687:ENST00000311015:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCGTTGACATTTAGGGAT
R:
CTGGGGGTGTGGCTACCATA
Band lengths:
223-727
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains