MmuINT1035789 @ mm10
Intron Retention
Gene
ENSMUSG00000050855 | Zfp940
Description
zinc finger protein 940 [Source:MGI Symbol;Acc:MGI:2446235]
Coordinates
chr7:29846469-29846960:-
Coord C1 exon
chr7:29846834-29846960
Coord A exon
chr7:29846565-29846833
Coord C2 exon
chr7:29846469-29846564
Length
269 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
AAAAAAAATCTTCTGGGCAGGAC
3' ss Score
4.87
Exon sequences
Seq C1 exon
AGACTGATGACGTTCAGAGACGTGGCCGTAGACTTCTCTCCAGAGGAGTGGGAGTGTCTGAGCCTGGACCAGAGGAGTTTATACAGAGATGTGATGCTGGAGAGCTACAGCCACCTCGTCTCAGTGG
Seq A exon
GTAAGATTCAGAGCTCAGCCCTGAATGTTCGTGCAGCAGCAACGGGAACAAACTTTTTCCAAGTCGTAGAGGAGTTCCTCTGAAGTTGGTTTATACAGAATTAGCAATAGTCCCTCCTGGCGAAATCCTCCATCTCCCTGACCGCTTAGAAATACTTTTTGACTTTCTCTTGTTCTTACTATTCTCTCTCATAACCGAGGAACCAGATGATAAATATACAGTTTTTACCATGTGCTCATTTCCTGTTTTAAAAAAAATCTTCTGGGCAG
Seq C2 exon
GACTTTTTGTTTATCGGCCACATCTGTTCTCCTTGTTGGAAAAAGGACAAGACCCCTGGATGATTTTGAGGGATGAGACAAGGGGACCTTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050855:ENSMUST00000085792:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGACGTTCAGAGACGTGG
R:
CTGGATAAGGTCCCCTTGTCTCA
Band lengths:
220-489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types