MmuINT1035831 @ mm10
Intron Retention
Gene
ENSMUSG00000051278 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127561475-127567701:+
Coord C1 exon
chr3:127561475-127563218
Coord A exon
chr3:127563219-127567627
Coord C2 exon
chr3:127567628-127567701
Length
4409 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCC
5' ss Score
9.16
3' ss Seq
GTTTGATTCTTTCATTGCAGCCA
3' ss Score
7.78
Exon sequences
Seq C1 exon
GGTTTTCAAAGACCATATAAGATGCCAAAGAAAGTGACTATTACTGAGAACAGTGAACCTGCTGCCTCACTTGGTGATGAGAACCCTGGCCCGCCTGGCCCGAGACTTCTTCCCACATTCTCCAGCACACTTCCTTTGTTTCCCACTGTTGGTCAGAAAGATTTAACTCCTGTGTCAACGGATAATCAGAGTCCCATCACATTCAGCAACAGAGAGAGAAGCGACACACCTTTATCACTTCCTTCTTCATACTTCAAGATTAACACAAACACACTAGGTAAAGAGGACAAGCTTTGCTTTCCTGTCAGTTCTGAAACCAAACATTCAGACTCTTTACTGGCCAGTGAACCCATGAGAAGAAATGGTTTAGACTCTCACTGTCCTGGAGTTTCACAAAACGTCAGAAGCAAAGCCCAGATATTAGCTCTTCTGAAGTCCAGCTCAACTAACAGGAAGGATCTGCATGGTGAGATTCCAGGACACTTTCCTAAGATAGAACCACAGGGGTGTTTGAATATTATTTCTAAGCCAGAGGAAGACTATGCAGAAACACAGAGCATAGGGAATTTACGCTGTGAGCAGCAGTCAGAAAATCCTACAAGAACCACAAGCCGGTGGGCCAGGTATTTACCTTCCCAGAGATCACCTCCCTGTTCTGCTGCAGATGAGAATGATACAGAGGACAAACCAGAAGCCCAAGAAGATGTGAACATTTTTAACTTGTCTGAACTTTTACAAAAAAAGTCAGAGCTCTTTGAAACATGTTCCAAAAAGGGAGAATTACACAGTGAGGACAAGCCAGTAGATAATACTTGCCAATACTGGAATCAGGAGGATAACTTAGCACCTTCATTCTGTAAGAACAGCAGTGTCCTGGTTAGCTGCAGCAGTAAAGAGAATGCCAGTTTATTATCAGAATCTGACATTCAGTACAGTAGCAAAGTACCAGTTAATCAACATGAGAAGGTGTGGACTCGAGAAGGTTCTCAGGGGGCAGATGCGGATGCAGCATTGGAACCGGAGTATAGACCAGTGTCACCTTTGCCAGAAATAGGACATAAACAAACTGAAGTTGAAGCTTCTCTAAGTACCAGCTCTAGGATCTCTGACGACATTGCTGACATGGGTTCTAAAAGCAATGCTGATAGAGAAGATCTGAAAACTGTTCATAAAGCTGTGCAACCATTTTTGGAGGTTTCTTTTAATCTGAGCAACTTTGAGACCAGTGACACTGATGAGGCGTCACAAGAAGACAGCAGACTTTCCCAGGATTCAGAGCGGTGGGAGAAGGAAGCTGTGCTTACAGATGATTCTTGTGTTCAGAAGAGCTGTGAGGATATAGGCTGCCGAGAAATTGTAGGAAAATTGCCACTCCTGTCATCTACCGATGACGAGCCTAAAGAGGCCCTCCCTGCTGATGGGACTCTGTTGTCAGAGTTCTGTGATAGAACCTGTGTGGGTTTCAATTCAGGACCTCATGGAGATGTAAAAACTGGCAAAGCACTAGAGGGACAGTGTCATAGTGACACAGGGAGCAGTTTGGACTCGTCGCTGGAGTGGAGTGAGGATGTAGCAGGGGACAGCAGAGAAGATGCTAGTCAATCTATCCAAGGCAATGCAATTAATTGTGGTGGTGTTTCACCCTCAAAGAAACCCAGAGGTGTAAACAGAAGCTTATACAGTCCTTATCTTCTAACCGCAGTCACTGACCCAGCGCCTGAGAACAGTGACCTGCTCTCAGAAG
Seq A exon
GTACCCAGCTTTTTATTTTGCAAAGTCACAGAGACAGAAATGATGAGCAGGTCTTATCACCAATCTCTAGCAGTGACATTAGTGGCCAGCTCTTGAGTACCACTCAGGATCACTTTGAGTGTCATGAACTAGAAGAATCCAGCACTCAAATTTCTAGTCCTTTATTTTATCCTATGGGAATCAAACATCCTATTTATAGAGACAGCGAAGCATATATTTCTGAGTCTAAAGAATTAGGAAGGATTAGAAGTTTGCCGTGTGATCATTTTGAAGTGGAAACTACACAGAGAAACCAGCAATCCTGGGCTACTTCTAAAAGTTCTTCAGAACTTTCTGAAGTAATAAATAACATGTCCCTTTTAAAGTCACAGTCTGAGCATAGCACAGCTTTAGGACACTTGACAATACTGAAGAAAAAGCACGCCTTTCCACATGAAGTTCCGCACAGTCGAGACCCAGATGTCAGTCCTAAAGGTTAGAGTCACTGGCATTTTTTTTTTCCCCCTTTGTAGCTCAAAGGAAAGGAAGAGTCCTGCTGTCTACTGTATTAGAGATTTACATATGTGGTGGCTCACGTCTGTAATCTCAGCACTTGGGAAGTAGAGACAGTATTAGGAGAGTTCAGAATTATCTGCAACTGTCTCCTGAGTTTGAGACCAATCCCTCCATAGATGGGGCTGGAGATTACACAGTGTAATCCATGTATTTGGTAATGACAACTCTCAGAGAGGATGATATAGTGAAGACTAAGTCTTTGTAACACGGTTCCCTAGTCTATTTAACATTAACCAGTCTCTATGGCATCTCTTCTGAAATGCCCTGTGCATTCGCAGAACATTGACAGGTATACGCAAGGGTGTGTTCAGGTTAAGCATGCTAGTCCACAGCTGTACTGCTTTTCCTTTCCATGCCTACATCCCCAGCCCAGAGTGCGCCACAAGAGTGCCCTCTGCTTCGTCCGTTCTGTAATGTTTCTTTATTCTCACAGTGGGAACAGGCCCTTAAATGTCAGTATATTTTACTCGCGAAATCCCGCAGTGGGTAACAGATCATTGCGAAATTATCACAACAGTGTTACTGCCTGCAAAAATCTATCAACTTTGTAAAGTTCACAAGTTCTTTCCGAGTCACTGTGGTAAATATGGTTGAGCCTCTCTTAGATTTTATAATTCTGCCATTTTCATGATTTCATGCACTCTTCATTCGTTTCTCTGTTTTTAAAATGAGTGTTGGTCTTTTTAATCTTGACTTATAATCATTTTATTGTGTATTGGCAATATTAATCCTTTATGATATCTGTCGCATATGTGTGTTTGTTTGTTTGTTTTTCAACATAGGGTTTTTCTATGTAGCCTGGGCTATTCTAGAACTTGCTCTGTAGACCAGGCTGGCTTCAAATCTGACTGCTTCTGCCTCCTGAGTGCTGGGATTAAAGGTGTGTGCCGCAGGCTGGAGAGTTGGCTCAGTGTTTAAAAGCATTTGCTGTTGCAAAGGACCTGGGTTCAATTCCTAGCACACCTAGAGGCTTACCACCTCTTCTTGCACCAGCATGTCTGGTGCACAGACACACAAGATAAAACATTCATATACATAAAATAATAAAAAAGTCGTTCACCCCCACCTGGTTTATGTATGTGCATTTTAACACAGCATCTTGCTGTATAGCTGTGTACCCTTGCTGTATGGCTCTGACTGGTCTGTAATATATGAAGGTAAATGAACAACACTATGATACTCACTGTTAGAATTAAATACTTACTTATCTCAAGCCATTTTTGCTAAAAGTATGAGTAAATTCCTATACATTCTAAAATTTGAAATTTGGTTAAGTTTGATAGTAATTTTTTTTTTAAGATTTATTTATTTGGGCTGTCGAGATGGCTCAGTGGGTAGGAACACTGACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCTAGCAACCACATGGTGGCTCACAACCACTCATAATGAGATCTGACATCCTCTTCTGCCACACCACGTCTGAAGACTGCTTCAGTGTGCTTTTGTATAATAATAAATAAATAAATCTCCAGGCCTGAGGGAGCAGGGCCAAGGGGAGTGAGCAGAGGTCCTAGAATTCAGTTCCCGAAGACGCCACATGAGGGCTCACAACCTTCTGTGCAGCTACAGTGTACTCATACATAAAATAAATAGATACATCTTTTAAAACAAAGATTTATTTATTTAATATATATCTATGTGTACACTTGTGTGCCAGAAGAAGGCATCAGATCTCATTTTGAAAGATTATGAGCCTCTATGTGGTTGCTGGAAATTGAACTTAGGACCTCTGGAAGAGCAGTCAGTTCTCTTAACTGCTGAGCCATCTCTCCAGCTCAGTAGTTTATTTTCTCAAACAAAAAAAAAAAAGATTTTTTTTTAAAGATTTATTTATTTTATATACGTGAGTACTCTGGAGCTGTCTTCAGACACACCAGAAGAGGGCATCCTATCCCACTACAGATGGTTTTGAGCCACCATGTAGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAACAGTCAGCTAAGAGTAGCTGCTGAGCCATCTCTCCAGCCCCAAATGAAAATCTTAATAATAAAAATGAAAGCCGGGTGTGGTGGTGCAGGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTAAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTTCAGGACAGCCAGGGCTACACAGAGAAACCTTGTCTCGAAAAACCAAAAAAATAAAATAAAATAAAAATTAAAAAATAAATAAAAATAAAAATGAATGGATGTAACTGATTGATAAATTAAAATAAGAACATAGCATTATAATATGAATATTTGGGAAATACAGCATTTTATTTTGAGAAAATAATCAAATTGGAAGAGACGATAACATTGCTTTACAACTATTCTGTGATGTGGTCATGCTCTGAGATGAGCTTAAACACCAACTATAGAATAATTGGTCACACAAGGCATGCAAGACTGACTTCTTGCATATCTCTGACCACAACATTTTTATCTACTCAGGAACACATAATTATATCTTACGTAGAGACCACCTTATTTAAAATTTTTTGTTTATTAATATTAAACACACAGCCAATAGTGCTAGTGAAAACAATCCGTATGTATTTTCTATGCAGCAGACATCACAACTCTCACACTTCAGAATACAAGATAGCACTCACTCTAGGGGACTTTAAATAGTGAAATCAGTAAAATCACAGAAATATGAACATTTTGGTACTAAATTGACTGAAAAAGGTATGACTGTGTACAGCATGAGGTAAGGCAGTGCTGTCTTGCTGGGAATGTGCTCGGCTGCTGGTCTGCCACCTTGCCAGCCTCATACCCTGCTTGCCTTTTCACACCTGCTTCTGGACTATGGCTTAGCTTTGCGTTAGGTCTCAGGTCAGGGTTACTTCCTAGGAGTGACCTTTCTAGAACGTTTGTGTTGTAATTCACCACCGTTCTGTATGATACCGTTTCCTGTTCTACTCTGCATTTATCTGGTATAACTGTGTGGTTGTCTTCTTTGTCCCCCTTTTCACTGCTATGTCCCCGGTGCTTAGTTCCAACGCTCTGGGTAGCAGATCTCTGGTCTGCGTAGAGGGCTGCAGGTCAGAAGCATTTCAGATAGGTTTAGATCGATTGGAGCGCCTTATAGCCCTCGACCCCCACCCCCGTGCTTATGTATAGCAGTAATAGTTTTATTAGCTTTCTTGCTCTCCACAGTTGGGCAGTACTTCATTTTTAACATTTGTATTATAGGTGATTATTAATTTAGTATGCGAAAGCATATCCCTATTAAGATCAGTAAGAGAACTGGAGGGAGGGCTCAGCAGCTAAGAATTTCCTGCTCGTGCTGAGGAACCTGATTTCGGTAAAGCATCCCCTTCTGGTCTCTGTGGCACCCGACATGAATATAGTGCATATATGCATGTGTAGACAGATATGCGTGCCAAATAAAGAAATCTGTCTGTCTAGTGTATCTATTTGAGACAGGGCTTCTCCATGTAGCCTTGGCTGTCCTGAAACTTACTGTAAACTAGGTTGGCTTTGAATCTACAATCTATCTACCTCCACTTTCTGAGTACTGGGATTAAAGGCATGTACCCACATATGGTCATATTTTTTTTTTAAAAGTAATCAGTAATGTTTTCTAAATATATTGAATTTTTGCCATAAGAATGTACCAGCCTATACAGAATGGTATACTCATACTCTGTATAGTATACTATACGGAATCTTTACTCATACTCCAGATTAAATGATTATCAAGATATTACTTTTTAAAGTGTATTGCTTCAGTTTTAGATGGAAAGGCATTTTTGCAAAATACCGTGATGCATATGACAAATGAGGCTGTTTGATTCTTTCATTGCAG
Seq C2 exon
CCAGGAAATCACCTGCCATAGAAGTTTCGCGTGCTCTGCTAGAGTGTCCTTGTGAGCATCGGGCTTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278:ENSMUST00000196141:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.639 A=NA C2=0.160
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types