RnoALTA0001432-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000039656 | Abca17
Description
ATP-binding cassette, subfamily A (ABC1), member 17 [Source:RGD Symbol;Acc:1560494]
Coordinates
chr10:13670223-13675994:-
Coord C1 exon
chr10:13675840-13675994
Coord A exon
chr10:13670358-13670378
Coord C2 exon
chr10:13670223-13670357
Length
21 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCCCATTTCTCGCCTTTCAGTTG
3' ss Score
9.41
Exon sequences
Seq C1 exon
GTCTTATTCCTCCTTCAAAAGGACACGCGTATATCCATGGCTGTGAGATCTCGAAAGACATGGTTCGGATCAGGAAGAACGTGGGCTGGTGCCCACAGCATGACATCTTGTTTGATAACTTCACGGTAACCGACCATCTTTATTTCTACGGTCAG
Seq A exon
TTGAAAGGCCTGTCTCACCAG
Seq C2 exon
GACTGTCATGAGAAAATAGAGGAGATGCTGCACACCCTCGGGCTGGAGGACAAGCGGAACTCAAGGTCCAAGTTCCTGAGCGGGGGGATTAAGCGCAAGCTCGCCATCGGCATCGCCCTCATAGCGGGCTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039656-20-22,20-21-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(35.2=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(35.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACAGCATGACATCTTGT
R:
GGGTGTGCAGCATCTCCTCTA
Band lengths:
102-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]