RnoALTA0010082-3/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000050052 | Cox19
Description
COX19 cytochrome c oxidase assembly factor [Source:RGD Symbol;Acc:1305631]
Coordinates
chr12:17395624-17396790:+
Coord C1 exon
chr12:17395624-17395733
Coord A exon
chr12:17396542-17396641
Coord C2 exon
chr12:17396642-17396790
Length
100 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
CTGGTGCCCGTACAGGACAGGAC
3' ss Score
0.22
Exon sequences
Seq C1 exon
GCCGCTCTCCGCTCTTGATTTCGCCGTGATGTCGACCGCAATGAACTTCGGGACCAAAAGCTTCCAGCCGCGGCCCCCAGACAAAGGCAGCTTCCCGCTAGACCACTTCG
Seq A exon
GACACGCCTCCCTCCGATGCTCTGGGTCTGCAGTGAACCGTTAGGCAAAGAACTGTTTTCAGAAAGCTTTCCGATGTCTAATACTGGGGCTGAAAGCCAG
Seq C2 exon
GGCTTGGCACATGCTGGGTGAGTGCTTCACCTCAGAGCCACACCTGCAGCCCAGAGGATTCCCAGTCACCATTCCGAAGTCTACAGTTGACCTGTCCTTCGGGAAACCGAAACGTGTAAAAGAAAAAAACAACTGGGAGAGAGTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050052-0-3,0-2,0-1,0-0-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.607 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTTCGCCGTGATGTCGAC
R:
CTCCAACTCTCTCCCAGTTGT
Band lengths:
244-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]