RnoINT0041063 @ rn6
Intron Retention
Gene
ENSRNOG00000050052 | Cox19
Description
COX19 cytochrome c oxidase assembly factor [Source:RGD Symbol;Acc:1305631]
Coordinates
chr12:17395624-17398355:+
Coord C1 exon
chr12:17395624-17395733
Coord A exon
chr12:17395734-17398243
Coord C2 exon
chr12:17398244-17398355
Length
2510 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
TTCCTTTTTTCTTTTTCTAGGTG
3' ss Score
13.02
Exon sequences
Seq C1 exon
GCCGCTCTCCGCTCTTGATTTCGCCGTGATGTCGACCGCAATGAACTTCGGGACCAAAAGCTTCCAGCCGCGGCCCCCAGACAAAGGCAGCTTCCCGCTAGACCACTTCG
Seq A exon
GTGAGGCGAGGCAAGGCCCAGACTGCTGGCGACCTGGGATTGGGTGGCAGTTAGGGGTACTGAATGTGGGTGGCAGCCTCTATCTAGGGTCCTGCTGAGTCTGAGTGGTAGGGAGTGCTGTTTTTCGGTGACAGGGTCGGGGTATTGGAAGTGGGTGCTAGGATCTGGGATGCTGGTTCTGGATGGCAGGGTCAGAGGTGGTGGGTTTGGGTGACAGAGTTATGGATGCAAGATATCTAAGTGACAGGGTCAGGGGTACTGGATTTGGGTTCAGGGTCTGGACTGCCGAGTCTGGGTGGCAGAGTCTGGAGGGCTGTTTCTTTGTAATAGATGGCAGTTTTGGGGTACTGGGTTTGGGTGGCCGGTCAGAGTTGCTGGAATCACGTGCACTGTCTGAGGAGTTGAATGTTGGGTGTGACGGGGCCTAGGGTGCTGGATTTAGGTGGTCAGGTCTAGGGTGCTGGATCGAGGGTAGGAGAGGAAGGTGGAGGATGTGAGAGGCAGCGTGTGGTATAATAGGCCTGGTTGGCATTGTTTTGTGAGTCGGATGTAGGTGTCAGGATGCTAGATGTGGTGGGCGGGGTCTGAGGTACTAGGACTAAGGGTGCAGAGCTATTAATATGACAGGCCCTTCTCGGGTTGTGGGGATGCAGCCAGAGAAACCGAGTCCTGAGGGCTCCTGTTTCAGAGGGCCATCTGTCATATCCCTCCAAGTAAAAGCTCAGCTTTGGGGCTAATGTGACGGGATGGTAACAGGAGTCCTGGAATGGGGCTTGATGCTAGGCCTCCTGGTGCCCGTACAGGACAGGACACGCCTCCCTCCGATGCTCTGGGTCTGCAGTGAACCGTTAGGCAAAGAACTGTTTTCAGAAAGCTTTCCGATGTCTAATACTGGGGCTGAAAGCCAGGGCTTGGCACATGCTGGGTGAGTGCTTCACCTCAGAGCCACACCTGCAGCCCAGAGGATTCCCAGTCACCATTCCGAAGTCTACAGTTGACCTGTCCTTCGGGAAACCGAAACGTGTAAAAGAAAAAAACAACTGGGAGAGAGTTGGAGGTACAGTTCGGAGGCTGAATGGGCAGTCCTCAGCACTACAATAAAAACAAAACCCACAGAAAACACGCCCCCTCCCAAACCTACCACAAGCAAACAGCTCTGAGAAATGCAGCAGACCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGGCTGTCCGTGTAGATCGGACACTGCGGTGACCTGCTGTGGAGACTAGTTCCAGGGACAGCTTTAGAGATGACTGGTTTTTTTTTTTTTTTTTGTTTTTTTGTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTGTACCACTGAGCTAAATCCCCAACCCCGACTGGTTTTTTTTTTTAAGTTTAATTATTTATTTAGTGTGGTTTGGGGATGCGCCATGGCACACATGTGGTTAGAGGAAAATTAGGGCTCTCTCTCCACCACCACGTGGATCCCAGAAATCAAACTTAGGCTGTCAGTCTTGGTAGCCAGTGTCTTTGTCCCACAGAGCCATCTCACTATCTTAAGATTATGATTTCTTTTTCTTATTTTTTTTTTTTTTGGTTCTTTTTTTTGGAGCTGGGGACCGAACTTCTTATTTTTTTTAAAGATTTATTTATTTATTATGACTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTCATGAGCCACCATGCGGTTGCTGGGAATTGAACTTAACCAGTAAGCCAGCTCTCCAGCCCCAGATTATGATTTCTTTACCAAACATTTCACTGGGAAAATTTCCACTTTGAATTTTTATTTTAATTAATTAGTTATTAATTAATTCTTTTTTTTTTTCAAGGCAGGGTCTCGCTATGCAGCCCTGGCTGTCCTGGAACTTGCTCTGTAGCCCAGAAATCTGCCTGCCTCTGCCTCATGCGTGCTGGGATTAAAGGCGTGTGCCAACATGACTGCATCTGAGCTTGTATGTACACCAGGTGTGGCCAGAAGGGAGGGTTCGATACCCTGGACCTGGAGTTACAGACATTCGTTAGCTGCCTAATGTGGGTACCGGGAACCAAACTCAGGTCTCTGGAAGAGCAGCCAGTGTTCATAACCAGTGAGCATCTCTCCGGCTGCTTTGTTTTGTGTTTTGTTCTGAAGTACAAGGGATTGAATCCAGGGGCCTGTATGCCAAACGTGCACCTTACCTCAGAGCCACACCCATAGCCTCACACAGGGAACAAATTTTTTTTTTTTTCCGGAGCTGGGGACCGAACCCAGGGCCTTGTGCTTGCTAGGTAAGCGGTCTACCACTGAGCTAAATCCCCAACCCCAGGGAACAAATTTTGATGGAGGCCGTGGCCTGCTCCTCAAGTCGGCTTGTGAGCAGGTCAGGCCGTCTCTATACACAGAGGATGTTGTCTTCCTTTTTTCTTTTTCTAG
Seq C2 exon
GTGAGTGTAAAAGCTTTAAGGAAAAATTCATGAAGTGTCTCCGCGACAAGAACTATGAAAATGCTCTGTGCAGAAATGAATCTAAAGAGTATTTAATGTGCAGGATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050052:ENSRNOT00000072509:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.607 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF067478=CHCH=WD(100=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]