HsaINT0040372 @ hg19
Intron Retention
Gene
ENSG00000240230 | COX19
Description
COX19 cytochrome c oxidase assembly homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28074]
Coordinates
chr7:1012817-1015235:-
Coord C1 exon
chr7:1015064-1015235
Coord A exon
chr7:1012929-1015063
Coord C2 exon
chr7:1012817-1012928
Length
2135 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
3' ss Seq
TGTTTTCTTTCTCGTTCTAGGTG
3' ss Score
13.37
Exon sequences
Seq C1 exon
GTGCTCGGCGCTCCCGGGGTGCCTGCTCGGCGCTCCGCCGGCCGCCCTGCGTACGCTCGCAAGGCGCTCGCAGACTCCGGAGTCGCCAACATGTCGACCGCCATGAATTTCGGGACCAAGAGCTTCCAGCCGCGGCCCCCGGACAAGGGCAGCTTCCCGCTGGATCACTTAG
Seq A exon
GTGAGCGGCGGAAGGTCGGCGGGCAGGGGTCTGCGATGGGGGGTCTGGGTCGCGGCCCAGCGCGGAGCCCTATGGGGTGCCGGCATCTAGCGCGGTGCAGGCGGGGAAACTGAGGCACGGCGGCCCGCCCCTCCGCCCCACCCAGCCCTGGGTCACTGCTGCGGCATGGACCCTGCAGGTGGGAGCTGGCAGGACCGTGGCCCCCGTGACGAGGGCAGCGACACCGACTCCTTGCGTCAGGCTTCCGGGTCTCCGGCTCCGCCCTGACTCACCCGGCGGGCTGTCTGTGCCCCGGGTTTGCAGAGCGGGGCATTCGGCGGCCACGAAGCCCGCAGCTGCAGCCGAGGCTTAGACGGTGCCTAGCGATGTCTGCTGCAAAGCTCAAAAGTGCTGCTGATCTCCCAGTGCTTCTGGCCGTATTCCGGTGGGGTTGCCTCCGTGGACATGAAGGCTTCGAAAAAGGATCTGTGGGCCGGGCGCGGTGGCTCATGCCTGTGATCCCAGCCCTTTGGGAGGCCGAGGTGGGCGGATCATTTAAGATCAGGAGTTCGAGACCAGCCTGCCCAACATGGGGAAACCCCGTCTCTACTAAAAATACAAAAATTAGTTGGGTGTGATGTGGCTCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCGGGAGACGGAGGTTGCAGTGAGCCGAGATCGGGCCACTGCACTGCAGCTTGGGCGACAGAGTGAGACAACGTCTCAAAAAAAAAAAGAAAGAAAAGAAAAGAAAAACGATCTGTGAATTACTGTTTCTTTCCCAACATTTTATTGTGACATTTTCAAATAGCAAAAATGAAAGAATTTTTACCCTGAACTCTCCTGTGACCATCACCTACATTGCACCTTAACCTCGTACTGGGCTGACTTTACCTCGTTGTGGGTTTTTTCCATTGTTGTTTTCAGCATGTTTATGAAGGAAACAAGTTTGGGTTTGATTGTTTTTGTTTTGAGACACGGTCTCACTCTGTTGCTTAGGCTGGAGTGCAGTGGTGCAATCATAGCTCACTGAAGCCTCGGCCTCCTTCCTTTCTGGACTCAGGGGAGTCTCCCGTCTCATCCTCTAGAGTAGCTGGGACTATAGGTGTGCAGCGCCACACCCAGCTAATTTTTTTTTTTTTTTTTTTTTTAGAGATGGGGTTTCCCCATGTTGCCCAGGCTGGATTATTTATTTATTTATTTTTGAAATGGACTCTCACTGTGTCGCCCAGGCTGGAGTGCAGTGGTGTGATCTCGACTCACTGCAACCTCCTCCTCCCGGGTTCAAGCGATTCTCCTGTCTCAGCCTCTAGAGTAGCTGGGACTATAGGTGTGCAACACCACACCCAGCTAATTATTATTGTTTTTTTATTTTTTATTTTAAAGATGGAGTTTCCCCATGTTGACCAGGCTGGATCATTTATTTATTTATTTTTGAAATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCTCGACTCGCTGCAACCTCCGCTTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGACACCCGCCACCATGCCCGGCTAATTTTTGTATTTTTAATAGAGATGGGGTTTCACCAAGTTGGCCGAGCTGGTCTTGAACTCCTGACCTCAGGTGATCCGCCCACCTCTGCCTCCCAAAGTGCTAGGATTACAGGCGTGAGCCACCGTGCCCAGCCTGGATTATTTTTAGGAGACAAGGTCTTGATCTGTTGCCCAGGCTGGAGTGCAGTGGTGTGATCAAGCTCACTGCAGCCTCGAAATCCTTTGCTCAAGCGATCTTCCTGCCTCAGCCTCCTGAGTAGCTGGAACCACAGACGTGCGCCACACCTAGCTAACTTTTAAGGTTTTTTTTGGTAGAGATGGGGGTCTCACTGTGTTGCCCAGGCTGGTCTCAAACTCCTGGGGTCAGGTGATCCTCTCAGAGTGCTGGGATTACAGGTGTGAACCACTGCGCCCGGCCTGAGGAAACAAGTTTTGAAAGGAAAAGCAGCGCAGCTCTTAAGGCTGTTGTGTGGTTGCATCACTTTTCACTCTGAAAAGAACATGCTGTTTTCTTTCTCGTTCTAG
Seq C2 exon
GTGAATGTAAAAGCTTTAAAGAGAAATTCATGAAGTGTCTTCATAACAATAATTTTGAAAATGCTTTGTGCAGAAAGGAATCAAAAGAATATTTAGAATGCAGGATGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000240230-COX19:NM_001031617:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF067478=CHCH=WD(100=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)