BtaINT0042980 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015253 | COX19
Description
Bos taurus COX19 cytochrome c oxidase assembly homolog (S. cerevisiae) (COX19), mRNA. [Source:RefSeq mRNA;Acc:NM_001109966]
Coordinates
chr25:42316375-42317157:+
Coord C1 exon
chr25:42316375-42316475
Coord A exon
chr25:42316476-42317045
Coord C2 exon
chr25:42317046-42317157
Length
570 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
ACTTTTCTGTTTCGTTCCAGGTG
3' ss Score
13.08
Exon sequences
Seq C1 exon
GAGTCTGGGTGCCGCCATCATGTCGACAGCTATGAACTTCGGGTCCAAGAGTTTCCAGCCGCGTCCCCCGGACAAGGGCAGCTTCCCGCTCGATCACTTCG
Seq A exon
GTGAGTGCGGGCGGCCCGGACTGCCCGGCCGGGCCCGCACAGCGCTGGGCCGGACGGTGGTGCCTCGCGGCGCGGGCGGGGCCTCGGAGGCTCGGCGCGGCCCGGCGCCTCCCGCCGCGGCCCGGGGCAGCAGCGGCCGGCGAGAGGGCACGGAGGCGCCTGCGGTCGGGCCGACGTGCCGGCAGCCGCGTCCTCGGCGGTGTGGGGCCCGCGGCCCGGTTCCGCGGGCGTCTGGTGCGGAAGCGGAGGGCGCTCCTGGTCGCCGCAGCTCCGCGGAAGCTGAGGCTTGGAAAATGGGTTTCGAGTGGTTCTTCGTATGCCCGTGTTTTACCGAGAGGTTCCAGACAGAGGGCAACGTCGGCGGGGAGCTCCCGGCGCCGCCGCTTGGACGCCCCCCTTTTCCTGCCCTCGCTCTTCCCCCGGGAAGTCTTTTCTCCTGTTTCCAGAGTGTTTCTGAAGGAAACTGGTTTCCCGAGGAGGAGGAGGAGGAGGAGGGCCGCCTGTAAGGTTGCTGGGCGGGCACGTCCTGTTTTCACTTTAAAAAGAAAATACTTTTCTGTTTCGTTCCAG
Seq C2 exon
GTGAATGTAAAAGCTTTAAAGAGAAATTCATGAAGTGTCTCCGGGACAATAATTTTGAAAATGCTTTGTGCAGAAATGAATCAAAAGAGTATCTGGAGTGCAGGATGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015253:ENSBTAT00000020289:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.464 A=NA C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF067478=CHCH=WD(100=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGCCGCCATCATGTC
R:
CTTTCCATCCTGCACTCCAGA
Band lengths:
207-777
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]