MmuINT0041254 @ mm10
Intron Retention
Gene
ENSMUSG00000045438 | Cox19
Description
cytochrome c oxidase assembly protein 19 [Source:MGI Symbol;Acc:MGI:1915283]
Coordinates
chr5:139342563-139345233:-
Coord C1 exon
chr5:139345072-139345233
Coord A exon
chr5:139342675-139345071
Coord C2 exon
chr5:139342563-139342674
Length
2397 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
TGGCTTTCTTCTTTCCCTAGGTG
3' ss Score
12.44
Exon sequences
Seq C1 exon
GCTCGACGCTTCCTGGACCCGCTCGGTGTTCAGCCATCTGCCCTGCGTCGCCGTCGCTCTCCGCTCTGGATTTCGCCGTGATGTCGACCGCAATGAACTTCGGGACCAAAAGCTTCCAGCCGCGGCCCCCAGACAAAGGCAGCTTCCCGCTGGACCACTTCG
Seq A exon
GTGAGGCGAGGCGAGGCACAGGCTGATGGCGGCCTGGGATCGGGTGGCAGAGTTAGGAATACTGAATCTGGGTGGCAGCGTCTCGGGTGCTGAGTCTGAGTGGTAGGGAGTGCTGTTTCTCGGTGACAGGATCAGGGGTATTGGAAGTAGGTGGCAGGATCTGGGATACTGGTTCTAGATGGCAGGGTCAGGGGTACTGGGGTACTGGGTTTGGGTGACAGAGTTATGGGTGCAGGATATCTGGGTGGCAGGGTCAGGGGTACTGGATCTGGGTTCAGGGTCTGGGCTGCTGGGTCTGGGTGGCAGAGACTGGAGTGTTGTCTCTTTGCTATAGATGGCAGGTTTGGGGGCACTGGGTTTGGATGGCAGGGCCTGGGGTTGTAGATCTGGGTGGCAGAGCCTAAGGTACTAGATTTGAGTGGCCGGGTCAGAGTTGCTGGATTTAGGTGTAATGTCTGAAGAGTTAGATGTTGGATGTGACAGGGCCTAGGGTGCTGGATCGAAGGTCTGAGAGCCAAAGTGAAGGAGCTGAATATGAGGGACAGTGTGTGGGGTTATAGACCTGGGTGGCATTGTCATGTGTGTTGATGACAGGATGCTAGAAATGGTGGGTGGGGTCTGAGGTACTGGACCCTGGATGCAGAGCAGTTAATATTACAGGTCCTTCCCGGGTAGTGGGGCTGGGCGTGCTCAGAGCACTGTGGGGGTGCAGTCAGAGAAACTGAGTCTTGAGGGCCCCTATTTCAGAGGGCCACATGTCATGGCTCTCCAAGTAAGACTTGGGGCTAATGTGATAGGATGGTGACAGGCCTCCTGGAACGGAGCTTGATGTTAGGCCCCCTGGCGGCAGCTCAGCTCAGCGCAGGACATACCCACCCTCCCCTAGCTCCAGGCTCTGGGTCTGCCGTGAACATTAGGCAAGGAAATATTTTCAAAAAGCTTTTTGATATCTAACACTGGGGCTGAAAGCCCGGGTTTGGCACATGCTAGGCGAGTGTTCACCTCTGAGCCACGCCTCCAGCCTGGAGGATTTCTAGTCACCGTTCTGAAGTCTGCAGTTAACAGGCCTTTTGGGAAACTGGAACATGGGAAAGAAAAAAAACAAACAAACTGGGAGAGAGTTGGAGATTCAGATTACAGAGGCCGAGCTGGTGCCTGGCACGCACAGGAACCTGAGTCCAGTCCTCAGCACTACAATAATTAAAAAAAGAAAAGACTGCCCTGCCTACCACCAGCACATAGGACATCCCCCCCCCCCCCACCTACCACCAGCACACAGACCTCCCCACAAGTCCTACCACCAGCACACAGCCCTGAGAGATGCAGCAGCCCTCAGCCCTCGTGTTAGTGTAGAAACGGCAGCTGTTAGTGTAGATTAGACGCTTCGGTGAACTGCTGTAGAGACTCCAGCTCCAGGGACAGCTTTAGAGATTACTGGTTTTTTGGGTTTTTTTTTTGGGGGGGGGGGTTCCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGTATTTTTTAAGTTATGCTTATTTATTTAGTGTGTTTGGGGATATGCCATGACACGTATATAGTCAGAGGACAAACTGTGGAAAACTGGGATCTCTCCACCCCCACGTGTGTCCCAGAGATCAAACTTAGGTTGTCAGCCTTGGTGGCAAGCGTGTTTACCCACTGAGCCATCTCACTATTTTTAGATTATGATTTCATTGCCAACATTTCATTGGGAAATTTTCCATTTAAAATTTTTATTTCAATTCGTTATTGATTCTTCATTTTTTTTTCAAAGGCAGGGTCTCACTATGTAGTCCTGGCTGTCCTGGAACTCGCTGCGTAGACCAGGCTGGACTCAAATGTACAAAGATCCACCGGCCTCTGCCTCCTGAATGCTAGAATTAAAGGTGTGTGCCAATATGACCGGCTTTATTATAATTTTTTTAAGTTTATGTGTATGTGTGTGCATCTGAGTTTGTATATACACCATTTGTATGCAGGCACCCTTGGTGGCCAGAAGCAGGTTTTTGATAGCCTGGAGCTGAAGTTACAGGCATTTGTTAGCTGCTCAATGTGTGTATCAGGAACCAAACTCAGGTCTCTGTCAGAGCAGCCAGTGTTCATAGCCAGTAAGCCATCTCCCCAGCTTCTTTCAGCCCTTTTGTTTTGAAGTACAGGGATTTGAACCCAGGGGACTATATGCCAAACATACACATTACCTCAGAGCCACACCCACAGCCTCACAAAGGGAACGAATTTTGATGGAAACCCTAGTGCTGCTCCTAAAGTCAGCGTGTGAGCGGGTCAGGCCTTCTCTTTAACTAATAGAATGCTGGCTTTCTTCTTTCCCTAG
Seq C2 exon
GTGAATGTAAAAGCTTTAAAGAAAAATTCATGAGGTGTCTCCGTGACAAGAACTATGAAAATGCTTTGTGCAGAAATGAATCTAAAGAGTATTTAATGTGCAGGATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045438:ENSMUST00000049630:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=NA C2=0.039
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF067478=CHCH=WD(100=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types