RnoALTA0010690-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000010649 | Ctnnd2
Description
catenin delta 2 [Source:RGD Symbol;Acc:620734]
Coordinates
chr2:83731471-83744843:+
Coord C1 exon
chr2:83731471-83731665
Coord A exon
chr2:83744522-83744652
Coord C2 exon
chr2:83744653-83744843
Length
131 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TAATGTTCCCCCCTGCCTAGACC
3' ss Score
6.46
Exon sequences
Seq C1 exon
CTGGGTCCCGAGCCTCGTATAGCAGCCAGCATGGGCACCTGGCCCCTGAGCTGCGGGCCCTGCAGTCCCCAGAGCACCACATAGACCCCATCTATGAAGACCGTGTCTATCAGAAGCCCCCTATGAGGAGTCTCAGCCAGAGCCAGGGGGATCCTCTGCCGCCAGCACACACCGGCACCTTCCGCACGAGCACAG
Seq A exon
ACCTGGTTAACCGTTTTTGTGAGCAGGTCCTCAATTTTTTACTTTGTCCCTACTTTCCTGTCCTAGCCCCATCCTCCCCTGGTGTCGACTCCGTCCCCTTGCAGCGCACAGGCAGCCAACACGGGCCACAG
Seq C2 exon
AATGCCGCAGCAGCCACCTTCCAGAGGGCCAGCTATGCTGCTGGCCCAGCCTCCAACTACGCAGACCCCTACAGACAGCTGCAGTATTGTGCCTCCGCTGACTCTCCGTACAGCAAATCTGGCCCTGCCCTCCCACCCGAAGGCACCTTGGCCAGATCCCCGTCCATTGACAGCATTCAGAAAGACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010649-14-19,14-18,14-17-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.767
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0051418=Arm=PU(7.5=3.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCAGAGCACCACATAGAC
R:
GGCCAGATTTGCTGTACGGAG
Band lengths:
254-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]