GgaALTA1001600-2/2 @ galGal4
Alternative 3'ss
Description
NA
Coordinates
chr2:77784558-77805949:+
Coord C1 exon
chr2:77784558-77784815
Coord A exon
chr2:77805631-77805696
Coord C2 exon
chr2:77805697-77805949
Length
66 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
GTTTTTTTTCCTCTGCCTAGACC
3' ss Score
8.81
Exon sequences
Seq C1 exon
AATCAGTCTGTATTTACTGCTTGTTTTTCCTCTGTCTTAAATATCTCTTAAATCTATTTGCAGCTGGGTCTCGGGCATCTTACAGCAGCCAGCACAGCCACCTTGGCTCCGAGTTAAGGGCACTGCAGTCTCCAGAACATCATATAGATCCTATTTACGAAGACAGAGTTTATCAGAAGCCCCCTATGAGGAGTCTCAGCCAGAGTCAGGGGGACCCTCTGCAACCAGCACACACAGGCACATATCGCACTAGTACAG
Seq A exon
ACCTGGTTAACCATTTCTGTGAACAGGTCCTCAATTTTTTACTTTGTCCCTACTTTCCTGTCGTAG
Seq C2 exon
CCCCATCTTCCCCTGGTGTCGACTCCGTACCCTTACAGCGCACAGGCAGTCAACACGGCACACAGAACGCAACCGCGACCTTCCAGAGGGCCAGCTATGCTGCAGGCCCAGCCTCCAATTACGCAGACCCCTACCGACAGCTGCAGTATTGTCCTTCTGTTGAATCACCATACAGCAAATCTGGGCCAGCCATCCCACCTGAGGGGACCTTGGCTAGGTCACCTTCCATTGATAGCATTCAGAAAGATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013001-0-3,0-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.839
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0051418=Arm=PU(7.5=3.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACACACAGGCACATATCG
R:
TCGGTAGGGGTCTGCGTAATT
Band lengths:
169-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]