DreALTA0008951-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000062415 | ctnnd2a
Description
catenin (cadherin-associated protein), delta 2a [Source:ZFIN;Acc:ZDB-GENE-030616-60]
Coordinates
chr24:22213260-22250211:-
Coord C1 exon
chr24:22250020-22250211
Coord A exon
chr24:22213501-22213569
Coord C2 exon
chr24:22213260-22213500
Length
69 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
GTCATTGTTCCTCTACCTAGACC
3' ss Score
8.13
Exon sequences
Seq C1 exon
GATCTCGAGGTTCATACAGTAATCAGCACGCACACCTGGGGCCCGAACTGAGGCCCCTGCAGTCTCCCGAGCATCACATCGAGCCCATATATGAGGACAGAGTCTACCAGAAAGTCCCCATGAGGAGCCTAAGCCAGAGCCAGGGAGAAACCCTCCCTCCGGCCCATACAGGAACATACAGGAATAACACAG
Seq A exon
ACCTAGTGAACCACTTTTGTGAGCAGGTCCTGAACTTCTTGTTTTGTCCCTACTCTCCTCCTGCCATAG
Seq C2 exon
CCCCGTCCTCCCCTGGTGTTGACTCCGTACCCTTGCAGCGAACAGCAAGCCAGAATGCCACAGGAACATTTCCCAGAGGCGGATATGCATCCGGCCAGAGTGCCAATTACACGGATACTTACCGCACGCTGCCGTACTGCTCATCAGTGGAATCTCCTTACAGCAAATCCGGCCCAGCACTGCCACCCGAGGGCAACCTGGCCCGCTCACCATCCATCGACAGCATTCAGAAGGATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062415-9-10,9-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.815
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0051418=Arm=PU(7.5=3.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCCCATGAGGAGCCTAAG
R:
CACTCTGGCCGGATGCATATC
Band lengths:
182-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]