BtaALTA0008359-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000017222 | CTNND2
Description
catenin (cadherin-associated protein), delta 2 [Source:HGNC Symbol;Acc:HGNC:2516]
Coordinates
chr20:61988239-62004289:+
Coord C1 exon
chr20:61988239-61988433
Coord A exon
chr20:62003968-62004033
Coord C2 exon
chr20:62004034-62004289
Length
66 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
GTAATTTCCCCCCTGCCTAGACC
3' ss Score
6.83
Exon sequences
Seq C1 exon
CTGGGTCCCGGGCCTCGTACAGCAGCCAGCACGGCCACCTGGGCCCCGAGCTGCGGGCCCTGCAGTCCCCGGAGCACCACATCGACCCCATCTATGAAGACCGTGTCTATCAGAAGCCCCCCATGAGGAGTCTCAGCCAGAGCCAGGGGGACCCTCTGCCGCCAGCACACACGGGCACGTACCGCACGAGCACAG
Seq A exon
ACCTGGTGAACCGTTTCTGTGAGCAGGTCCTCAATTTTTTACTCTGTCCCTACTTTCCTGCCCTAG
Seq C2 exon
CCCCGTCCTCCCCCGGTGTCGACTCCGTCCCCTTGCAGCGCACAGGCAGCCAGCACGGCCCGCAGAGCGCCGCCGCAGCCACCTTCCAGAGGGCCAGCTATGCCGCCGGCCCTGCCTCCAGCTACGCGGACCCCTACCGACAGCTGCAGTACTGTCCTTCCGTTGAGTCTCCGTACAGCAAATCCGGCCCTGCCCTTCCCCCTGAAGGCACCTTGGCCAGGTCCCCATCCATCGACAGCATTCAGAAAGATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017222-5-8,5-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAGTCTCAGCCAGAGC
R:
ATAGCTGGCCCTCTGGAAGG
Band lengths:
173-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development