RnoALTA0011101-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000015751 | Cyp4f18
Description
cytochrome P450, family 4, subfamily f, polypeptide 18 [Source:RGD Symbol;Acc:1305261]
Coordinates
chr16:19506493-19507630:+
Coord C1 exon
chr16:19506493-19506637
Coord A exon
chr16:19507485-19507576
Coord C2 exon
chr16:19507577-19507630
Length
92 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
3' ss Seq
CCTACCATGTGGACTTGGAGGGA
3' ss Score
-10.37
Exon sequences
Seq C1 exon
ATCCAGAGCTCAGAGGAAGGGCTCCTGTACATCCAGAGCCTGTCGAGAACCTTCAGGGATGTTTGCTGCTGGTGGGTGGGGCCGTGGCACCCCGTTATCCGCATATTCCACCCTGCCTTCATCAAGCCCGTGATCTTGGCTCCAG
Seq A exon
GGAGGGGAGTGTGAAGATACTAGGCTGAGGGCCCTTAGCTCTCCCGTGCCCTCCCTGCTGCCATGGCTCCTGATGGTCCTTGTTCAAACCAG
Seq C2 exon
CTTCAGTTGCCCCCAAGGACAGAGTCTTCTACCGTTTCCTGAAGCCGTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015751-8-8,8-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGAGCTCAGAGGAAGGG
R:
AGAAGACTCTGTCCTTGGGGG
Band lengths:
175-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]