RnoINT0044570 @ rn6
Intron Retention
Gene
ENSRNOG00000015751 | Cyp4f18
Description
cytochrome P450, family 4, subfamily f, polypeptide 18 [Source:RGD Symbol;Acc:1305261]
Coordinates
chr16:19506493-19507630:+
Coord C1 exon
chr16:19506493-19506637
Coord A exon
chr16:19506638-19507576
Coord C2 exon
chr16:19507577-19507630
Length
939 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
3' ss Seq
ATGGTCCTTGTTCAAACCAGCTT
3' ss Score
4.11
Exon sequences
Seq C1 exon
ATCCAGAGCTCAGAGGAAGGGCTCCTGTACATCCAGAGCCTGTCGAGAACCTTCAGGGATGTTTGCTGCTGGTGGGTGGGGCCGTGGCACCCCGTTATCCGCATATTCCACCCTGCCTTCATCAAGCCCGTGATCTTGGCTCCAG
Seq A exon
GTAGATACCATGCTGGTTCCAGCTTGCATGCCCTTGACCCTCAAGTGCAGTCTACCACAGGAAATGTGCCTGCTGTGCTGCATCTAGACTCATCTGACTCCTCTGTGGCCATGAGTCTCCTGTCTGGAGCATGCCCTGTGATGTCTTTAATCTTTCTGTTGTGTGCTGTTATCTGGATGGACCTGGTTCTCACTTGGGCTCTTACAACAATGGTTCTCTGTGGGGCCATAAACAATTGGGATATGTTGGGTTCTGACTGGCTTTAATCTGAGGTGTTAGAAATAGTCTTTTCCTCCTGGTTGTGTTTGGAGTGTCCGAAGGGTGGGACAACATTTTCTCCTCTAAAACTATATTTTCCCAAACACTATGTTTTATCTTCACTGTGTAGTTCTGCCTAGCCTGGAATATTATGCAGACCAGGCTGGCCTAAAGCTCACAGAAATCCACCTGCCTCTCTTTTCAGAGTACTGAGATTCAAGGCGTGTTCCACGCCTGGCCCAGAAATCACATCTGAGACCTGTCCATGGGGTGTGTTTAGCCATCCGTGTCAGTTGGGTCAGGTCACGGGTGTTTTGGTCATGTCAGTCTATGTGTGTCGTGTCATATGACTGGGTCAGATGTCAGCACATGCTGGGGTAGACAGGAACACTGAGTCTCTGGAAAGGTCTGCAGAGTGTGATACTGCGCTTGGCAGGGTGAACAGGTTAGACCATGTGGTAGCCACGTGAAGGTGTGCTGCAGTGTGTACGCCGTGTCAGGCTGAGCCTTCTCTTTCTAGTGCTGATGTCTGTCTGTCCCTCTTGTCTCCCTCTGTCCCTGCCCCCAAACCTACCATGTGGACTTGGAGGGAGGGGAGTGTGAAGATACTAGGCTGAGGGCCCTTAGCTCTCCCGTGCCCTCCCTGCTGCCATGGCTCCTGATGGTCCTTGTTCAAACCAG
Seq C2 exon
CTTCAGTTGCCCCCAAGGACAGAGTCTTCTACCGTTTCCTGAAGCCGTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015751:ENSRNOT00000021609:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGAGCTCAGAGGAAGGG
R:
CACGGCTTCAGGAAACGGTAG
Band lengths:
194-1133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]