RnoALTA0012279-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52370064-52371309:-
Coord C1 exon
chr10:52371082-52371309
Coord A exon
NA
Coord C2 exon
chr10:52370064-52370196
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
AGGAAGCTATCATTTCTCAGCTT
3' ss Score
1.63
Exon sequences
Seq C1 exon
AACATCCACCTGGTGGCCAAATGGCTCAGTACCCTGGAGAAGAAACTGGAGGAGCTCAGCGAGGAAAGTCACCCAGACTTCAGGGTCTTCATCAGCGCCGAGCCTGCACCCTCCCCTGAGGGCCACATCATTCCCCAGGGCATTCTGGAAAACTCCATTAAGATCACCAACGAGCCCCCCACAGGCATGCATGCCAACTTACACAAAGCCCTGGACAATTTCACTCAG
Seq A exon
NA
Seq C2 exon
CTTTTCTCCATGGGAAAGGGAAATACAGGAAGGTAGGACCTACGGCCCATCTTGAAACCCCAGTGAGCTTTATTCGTACTTATGGAGAAGCTTCTAGGAGCTGTCAGAAGGGTCTTCCTCTCTGCTGTCAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-92-90,92-89-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=NA C2=0.118
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=PD(2.3=33.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSRNOT00000005583fB4274
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAACTTACACAAAGCCCT
R:
CACTGGGGTTTCAAGATGGGC
Band lengths:
102-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]