RnoEX0028670 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52367333-52375508:-
Coord C1 exon
chr10:52375381-52375508
Coord A exon
chr10:52371082-52371309
Coord C2 exon
chr10:52367333-52367524
Length
228 bp
Sequences
Splice sites
3' ss Seq
GGGTCTTTCCTTCCCGACAGAAC
3' ss Score
10.12
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GAAAGAAACTCGGATATACATTCAACAATCGGAACTTCCACAACGTGTCTCTAGGGCAAGGTCAAGAAGTAGTTGCTGAGGCTGCACTGGACCTGGCTGCTAAGAAAGGTCACTGGGTGATTCTGCAG
Seq A exon
AACATCCACCTGGTGGCCAAATGGCTCAGTACCCTGGAGAAGAAACTGGAGGAGCTCAGCGAGGAAAGTCACCCAGACTTCAGGGTCTTCATCAGCGCCGAGCCTGCACCCTCCCCTGAGGGCCACATCATTCCCCAGGGCATTCTGGAAAACTCCATTAAGATCACCAACGAGCCCCCCACAGGCATGCATGCCAACTTACACAAAGCCCTGGACAATTTCACTCAG
Seq C2 exon
GACACTCTGGAGATGTGCTCCCGGGAGACAGAGTTCAAGACCATCCTCTTTGCTTTGTGTTACTTTCATGCCGTGGTTGCCGAAAGACGCAAGTTTGGGCCGCAGGGATGGAATCGTTCCTACCCCTTTAACACTGGGGACCTCACCATCTCTGTGAATGTGCTGTACAATTTCCTGGAGGCTAACACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171_MULTIEX3-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(16.1=100)
A:
PF0302810=Dynein_heavy=FE(10.7=100)
C2:
PF0302810=Dynein_heavy=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGAACTTCCACAACGTGTC
R:
CTTTGTGTTAGCCTCCAGGAA
Band lengths:
292-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]