RnoEX0028669 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52371082-52385587:-
Coord C1 exon
chr10:52385439-52385587
Coord A exon
chr10:52375381-52375508
Coord C2 exon
chr10:52371082-52371309
Length
128 bp
Sequences
Splice sites
3' ss Seq
AAATCCCATGCTTATCTTAGGAA
3' ss Score
4.18
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
AGATTTTGTTGAGGAGAAGTTAGGAAGCAAATACGTGATGGGAAGACCACTGGATTTTGTAAGCTCATTTGAAGAGTCAGGACCAGCCACTCCCATGTTTTTCATCCTGTCTCCAGGGGTGGACCCACTGAAGGATGTGGAAAATCAAG
Seq A exon
GAAAGAAACTCGGATATACATTCAACAATCGGAACTTCCACAACGTGTCTCTAGGGCAAGGTCAAGAAGTAGTTGCTGAGGCTGCACTGGACCTGGCTGCTAAGAAAGGTCACTGGGTGATTCTGCAG
Seq C2 exon
AACATCCACCTGGTGGCCAAATGGCTCAGTACCCTGGAGAAGAAACTGGAGGAGCTCAGCGAGGAAAGTCACCCAGACTTCAGGGTCTTCATCAGCGCCGAGCCTGCACCCTCCCCTGAGGGCCACATCATTCCCCAGGGCATTCTGGAAAACTCCATTAAGATCACCAACGAGCCCCCCACAGGCATGCATGCCAACTTACACAAAGCCCTGGACAATTTCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171_MULTIEX3-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.158
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(19.2=100)
A:
PF0302810=Dynein_heavy=FE(16.1=100)
C2:
PF0302810=Dynein_heavy=FE(10.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACCCACTGAAGGATGTG
R:
AGGGCTTTGTGTAAGTTGGCA
Band lengths:
243-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]