GgaEX1020256 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1153031-1171663:+
Coord C1 exon
chr18:1153031-1153179
Coord A exon
chr18:1155760-1155887
Coord C2 exon
chr18:1171436-1171663
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTCTTTTTCTTTTAGGGA
3' ss Score
12.61
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
AGATTTTGTAGAAGAGAAGCTTGGCAGTAAATATGTGGCCGGGAGACCCCTGGACTTTGCAGCATCCTTTGAGGAATCGGGACCTGCAACCCCAATGTTTTTTATCCTGTCCCCAGGAGTTGACCCACTGAAGGATGTGGAGAAGCAAG
Seq A exon
GGAAAAAACTCGGGTACACATTTAACAACAGGAATTTCCACAACGTGTCCCTGGGACAAGGCCAGGAGGTGGTCGCTGAGCAAGCTCTGGATGTGGCTGCAGCAGAGGGGCACTGGGTCATCCTGCAG
Seq C2 exon
AACATCCATCTGGTGGCCAAGTGGCTGAGCTCTCTGGAGAAGAAGCTGGAGCAGCACAGTGAGGGCAGCCATCGGGATTTCCGTGTCTTCATTAGCGCAGAGCCAGCTCCGTGCCCAGAGAGCCACATCATTCCGCAGGGCATCCTGGAGAGCTCCATCAAAATCACCAACGAGCCACCGACCGGGATGCACGCCAACTTGCACAAAGCCCTCGACAACTTCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'74-74,'74-73,75-74=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.9=100)
A:
PF0302810=Dynein_heavy=FE(6.0=100)
C2:
PF0302810=Dynein_heavy=FE(10.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTGCAACCCCAATGTTT
R:
GGTGGCTCGTTGGTGATTTTG
Band lengths:
249-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]