GgaEX1020256 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1169014-1186544:+
Coord C1 exon
chr18:1169014-1169162
Coord A exon
chr18:1171743-1171870
Coord C2 exon
chr18:1186317-1186544
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTCTTTTTCTTTTAGGGA
3' ss Score
12.61
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
AGATTTTGTAGAAGAGAAGCTTGGCAGTAAATATGTGGCCGGGAGACCCCTGGACTTTGCAGCATCCTTTGAGGAATCGGGACCTGCAACCCCAATGTTTTTTATCCTGTCCCCAGGAGTTGACCCACTGAAGGATGTGGAGAAGCAAG
Seq A exon
GGAAAAAACTCGGGTACACATTTAACAACAGGAATTTCCACAACGTGTCCCTGGGACAAGGCCAGGAGGTGGTCGCTGAGCAAGCTCTGGATGTGGCTGCAGCAGAGGGGCACTGGGTCATCCTGCAG
Seq C2 exon
AACATCCATCTGGTGGCCAAGTGGCTGAGCTCTCTGGAGAAGAAGCTGGAGCAGCACAGTGAGGGCAGCCATCGGGATTTCCGTGTCTTCATTAGCGCAGAGCCAGCTCCGTGCCCAGAGAGCCACATCATTCCGCAGGGCATCCTGGAGAGCTCCATCAAAATCACCAACGAGCCACCGACCGGGATGCACGCCAACTTGCACAAAGCCCTCGACAACTTCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'58-65,'58-63,59-65
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.1=100)
A:
PF0302810=Dynein_heavy=FE(6.0=100)
C2:
PF0302810=Dynein_heavy=FE(10.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTGCAACCCCAATGTTT
R:
GGTGGCTCGTTGGTGATTTTG
Band lengths:
249-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]