MmuEX6091648 @ mm9
Exon Skipping
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117895050-117897794:-
Coord C1 exon
chr11:117897646-117897794
Coord A exon
chr11:117895563-117895690
Coord C2 exon
chr11:117895050-117895277
Length
128 bp
Sequences
Splice sites
3' ss Seq
CCTGTTTTCCCTCTTTTTAGGGA
3' ss Score
12.78
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAATTTTGTGGAAGAGAAGATGGGCAGTAAGTTCGTTGAAGGCCGGAGCGTGGAGTTCTCCAAGTCCTACAAAGAGAGCAGCCCTTCCACACCAATCTTCTTCATCCTTTCCCCCGGGGTTGACCCCCTCAAAGACGTGGAGGCCCTCG
Seq A exon
GGAAAAAACTGGGATTTACCATAGACAATGGGAAACTCCACAACGTGTCCCTGGGGCAAGGACAAGAGGTGGTAGCTGAGAACGCGCTGGATGTGGCTGCCGAAAAGGGACACTGGGTCATTCTGCAG
Seq C2 exon
AACATTCACCTGGTGGCGAGATGGCTGGGTATCCTGGACAAGAAGGTAGAACGCTACAGCTCGGGCAGCCATGAGGACTACCGAGTGTTCATCAGTGCTGAGCCTGCTCCCACGGCTGAGACGCACATCATCCCCCAGGGCATCCTGGAAAATGCCATCAAAATCACCAATGAGCCTCCCACGGGCATGTATGCCAACCTGCACAAGGCGCTGGATCTTTTCACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-'80-80,'80-78,81-80=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.0=100)
A:
PF0302810=Dynein_heavy=FE(6.3=100)
C2:
PF0302810=Dynein_heavy=FE(11.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGACCCCCTCAAAGACGTG
R:
TGAAAAGATCCAGCGCCTTGT
Band lengths:
254-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: