RnoEX6050819 @ rn6
Exon Skipping
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107042282-107044855:-
Coord C1 exon
chr10:107044707-107044855
Coord A exon
chr10:107042902-107043029
Coord C2 exon
chr10:107042282-107042530
Length
128 bp
Sequences
Splice sites
3' ss Seq
CCTGTTTTTCCCCTCTTCAGGGA
3' ss Score
11.69
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAATTTTGTGGAAGAGAAGATGGGTAGTAAGTTTGTAGAAGGCCGGAGCGTGGAGTTCTCCAAGTCCTACGAAGAGAGCAGCCCCTCCACACCAATCTTCTTCATCCTGTCCCCCGGGGTCGACCCCCTCAAAGACGTGGAGGCCCTCG
Seq A exon
GGAAAAAACTGGGATTTACCATAGACAATGGGAAACTCCATAACGTGTCCCTGGGGCAAGGACAAGAGGTGGTGGCCGAGGATGCGCTGGACGTGGCTGCCGAGAAAGGACACTGGGTCATTCTGCAG
Seq C2 exon
GCACAGGAATCCTTGCCGCAGAACATTCACCTGGTGGCGAGATGGCTGAGTATCCTGGACAAGAAGGTGGAACGCTACAGCTCAGGTAGCCACGAGGACTACCGGGTGTTCATCAGCGCAGAGCCTGCTCCCTCCGTGGAGACACACATCATCCCCCAGGGCATCCTGGAAAACGCCATCAAAATCACCAACGAGCCTCCCACGGGCATGTATGCCAACCTGCACAAGGCGCTGGACCTTTTCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028-'82-87,'82-85,83-87=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(6.8=100)
A:
PF0302810=Dynein_heavy=FE(5.9=100)
C2:
PF0302810=Dynein_heavy=FE(10.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTTCATCCTGTCCCCCG
R:
GGGAGGCTCGTTGGTGATTTT
Band lengths:
255-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]