GgaEX6016560 @ galGal3
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
NA
Coordinates
chr18:9765359-9766142:+
Coord C1 exon
chr18:9765359-9765507
Coord A exon
chr18:9765636-9765763
Coord C2 exon
chr18:9765915-9766142
Length
128 bp
Sequences
Splice sites
3' ss Seq
GCCCATTCCTCCCCTTTCAGGCA
3' ss Score
10.28
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GAACTTCGTGGAAGAGAAGATGGGCAGCAAGTTTGTGGAAGGCAGGAGTGTGGAGTTCTCCAAGTCGTACGAGGAGAGCAGCCCCTCCACGCCCGTGTTTTTCATCCTCTCACCTGGAGTTGACCCTCTGAAGGACGTGGAAGCGCTGG
Seq A exon
GCAAGAAGCTGAATTTCACCATCGACAACGGGAGGATCCACAACGTCTCGCTGGGGCAGGGCCAGGAGGTGGTGGCGGAGCAGGCGCTGGAGGTGGCAGCAGCACAGGGGCACTGGGTCATCCTGCAG
Seq C2 exon
AACATCCACCTGGTGGCCCGCTGGCTGGGCACGCTGGAGAAGCGCATGGAGAGGCACAGCACAGACAGCCACCCCGACTACCGCGTGTTCATGAGCGCCGAGCCGGCCCCCAGCCCCGAGGCACACATCATCCCACAGGGGCTGCTGGAAAATGCCATTAAGATCACCAACGAGCCGCCCACTGGCATGCATGCCAACCTGCACAAAGCCCTCGACCTCTTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106-'30-31,'30-30,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.1=100)
A:
PF0302810=Dynein_heavy=FE(6.0=100)
C2:
PF0302810=Dynein_heavy=FE(10.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCAGGAGTGTGGAGTTCT
R:
CTGTGGGATGATGTGTGCCTC
Band lengths:
249-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]