BtaEX6090357 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54394207-54397201:+
Coord C1 exon
chr19:54394207-54394355
Coord A exon
chr19:54395409-54395536
Coord C2 exon
chr19:54396974-54397201
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCTGTTTTTCTTCAGGGA
3' ss Score
12.31
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
GAACTTTGTGGAGGAGAAGATGGGCAGCAAGTTCGTGGAGGGCCGGAGCGTCGAGTTCTCCAAGTCCTATGAGGAAAGCAGCCCCTCCACCCCCATCTTCTTCATCCTCTCCCCGGGGGTCGACCCCCTGAAGGACGTGGAAGCCCTGG
Seq A exon
GGAAAAAACTGGGATTTACCATAGACAACGGGAAACTCCATAACGTGTCCCTGGGGCAGGGACAAGAGGTGGTGGCCGAGAACGCCCTGGACGTGGCGGCGGAGAACGGACACTGGGTTATCCTCCAG
Seq C2 exon
AACATCCACCTGGTAGCCCGGTGGCTGAGCACCCTGGACAAGAAGCTGGAGAGGCACAGCGCCGGCAGCCACGATGACTACCGCGTGTTCATCAGCGCCGAGCCGGCCCCCAGCCCCGAGAGCCACATCATCCCCCAGGGCATCCTGGAGAACGCCATCAAGATCACCAACGAGCCGCCCACGGGCATGTACGCCAACCTGCACAAGGCCCTGGACCTCTTCACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920-'75-80,'75-79,76-80=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.1=100)
A:
PF0302810=Dynein_heavy=FE(6.0=100)
C2:
PF0302810=Dynein_heavy=FE(10.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCACCCCCATCTTCTTCA
R:
CGGCTCGTTGGTGATCTTGAT
Band lengths:
243-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]