MmuEX0015121 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65855187-65871068:-
Coord C1 exon
chr11:65870920-65871068
Coord A exon
chr11:65859407-65859534
Coord C2 exon
chr11:65855187-65855414
Length
128 bp
Sequences
Splice sites
3' ss Seq
AAATTCCATGCTTATTTTAGGAA
3' ss Score
6.5
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGATTTTGTTGAGGAGAAGTTGGGAAGCAAATACGTGATGGGAAGAGCACTCGATTTTGTAACCTCATTTGAAGAGTCAGGACCAGCCACTCCCATGTTTTTCATCCTGTCTCCAGGGGTGGATCCACTGAAGGATGTGGAAAATCAAG
Seq A exon
GAAAGAAACTTGGATATACATTCAACAATCGGAACTTCCACAACGTGTCCCTAGGGCAAGGACAAGAGGTAGTTGCTGAGGCTGCACTGGACTTGGCTGCTAAGAAGGGTCACTGGGTGATTCTGCAG
Seq C2 exon
AACATCCACCTGGTGGCCAAGTGGCTCAGTACCCTGGAGAAGAAACTGGAGGAGCTCAGCGAGGAAAGTCACCCAGACTTCAGGGTCTTCATCAGCGCAGAGCCTGCACCCTCCCCTGAGGGCCACATCATTCCCCAGGGCATTCTGGAAAACTCCATTAAGATCACCAATGAGCCTCCCACAGGCATGCACGCCAACTTACACAAAGCCCTGGACAACTTCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.118
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(27.2=100)
A:
PF0302810=Dynein_heavy=FE(23.9=100),PF0302810=Dynein_heavy=PU(0.1=0.0)
C2:
PF0302810=Dynein_heavy=FE(10.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGCCACTCCCATGTTTT
R:
TGGGAGGCTCATTGGTGATCT
Band lengths:
250-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types