BtaEX6087238 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31212972-31226808:+
Coord C1 exon
chr19:31212972-31213120
Coord A exon
chr19:31223662-31223789
Coord C2 exon
chr19:31226581-31226808
Length
128 bp
Sequences
Splice sites
3' ss Seq
CCACTCCATGCTCCTTTCAGGCA
3' ss Score
8.04
5' ss Seq
CAGGTACGC
5' ss Score
10.12
Exon sequences
Seq C1 exon
AGATTTTATTGAGGAGAAGTTAGGAAGCAAGTATGTGGTGGGAAGAGCACTGGACTTTGCAGCCTCTTTTGAAGAATCAGGACCAGCCGCTCCCATGTTCTTCATCCTTTCTCCAGGGGTGGACCCACTGAAGGATGTGGAAAGTCAAG
Seq A exon
GCAAAAAACTCGGATATACCTTCAACAACCGGAACTTCCACAACGTGTCTTTGGGGCAAGGACAGGAGGTTGTGGCTGAGGCTGTGCTGGACCTGGCTGCCAAGAAAGGCCACTGGGTTATTTTGCAG
Seq C2 exon
AATATCCACCTGGTGGCCAAGTGGCTTGGCGCCCTGGAGAAGAAGCTGGAGGAGCATAGTGAGAACAGCCACGCAGAGTTCAGGGTCTTCATGAGCGCGGAGCCCGCACCCTCCCCTGGGAGCCACATCATCCCCCAAGGCCTCCTGGAAAATGCCATCAAGATCACCAGCGAGCCACCCACGGGCATGCACGCCAACCTGCACAAGGCCCTGGACAACTTCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'85-95,'85-94,86-95=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.066
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.1=100)
A:
PF0302810=Dynein_heavy=FE(6.0=100)
C2:
PF0302810=Dynein_heavy=FE(10.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGACTTTGCAGCCTCTT
R:
CATTTTCCAGGAGGCCTTGGG
Band lengths:
256-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]