HsaEX6021117 @ hg19
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11808978-11833410:+
Coord C1 exon
chr17:11808978-11809126
Coord A exon
chr17:11827131-11827258
Coord C2 exon
chr17:11833183-11833410
Length
128 bp
Sequences
Splice sites
3' ss Seq
CGCCTCCATCCTCCTTTTAGGAA
3' ss Score
11.6
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGATTTTGTTGAAGAGAAGTTAGGAAGCAAATACGTGGTGGGAAGAGCCCTAGATTTTGCAACCTCATTTGAAGAATCGGGACCAGCCACTCCTATGTTTTTCATCCTGTCTCCAGGGGTGGACCCACTGAAGGATGTAGAAAGTCAAG
Seq A exon
GAAGAAAACTTGGATACACCTTCAACAATCAGAACTTTCACAACGTGTCTTTGGGGCAAGGACAGGAAGTGGTGGCTGAGGCTGCGCTGGACCTCGCTGCCAAGAAAGGTCACTGGGTTATTTTGCAG
Seq C2 exon
AACATTCACCTGGTGGCCAAGTGGCTCAGCACCCTGGAGAAGAAGCTGGAGGAGCACAGTGAGAACAGCCACCCAGAGTTCAGGGTCTTCATGAGTGCAGAGCCAGCACCCTCCCCTGAGGGCCACATCATCCCCCAGGGCATCCTGGAGAACTCCATTAAGATCACCAATGAGCCCCCCACGGGCATGCATGCCAACCTGCACAAGGCCCTGGACAACTTCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'61-63,'61-62,62-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.211
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(27.8=100)
A:
PF0302810=Dynein_heavy=FE(23.3=100),PF0302810=Dynein_heavy=PU(0.1=0.0)
C2:
PF0302810=Dynein_heavy=FE(10.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGACCCACTGAAGGATGT
R:
GAAGTTGTCCAGGGCCTTGTG
Band lengths:
254-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)